Zea mays (maize): 100384244
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Entry
100384244 CDS
T01088
Name
(RefSeq) uncharacterized protein LOC100384244
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
zma
Zea mays (maize)
Pathway
zma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100384244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
100384244
03041 Spliceosome [BR:
zma03041
]
100384244
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100384244
Spliceosome [BR:
zma03041
]
Complex B
Other components
Prp19-related factors
100384244
Complex C
100384244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
PPR
UTP6_C
ARM_TT21
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
100384244
NCBI-ProteinID:
NP_001349249
UniProt:
A0A1D6F2G7
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All DBs
Position
2:complement(220719120..220724280)
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AA seq
927 aa
AA seq
DB search
MPSTSGPVAVASASASAKAAPSPDVGISPDLYPSEDDLAYEEEILREPFKLKGWWRYLVA
RAAAPFAKRAVIYERALKALPGSYKLWHAYLRDRLDHARPHPIDHPAYSSLNNTFERALA
TMHKMPRVWVLYLTSLLDQRLLTRARRAFDRALRALPVTQHDRIWPLYLRLASLPACPVE
TSLRVFRRYLQFDPSHAEDFINFLVSTNHWQEAANRLASVLNDDGFRSVKGKTRHQLWLE
LCDILTKHADEVAGLKVDAILRGGIRKFTDEVGKLWTSLADYYVRRGLFEKARDVFEEGV
SSVVTVKEFSVVFEAYTQFEQSMLAAKLEAAEEEGAEDVNEGGGKKSGIDNLSKKFLDGF
WLNDEDDTDLRMARFERLLDRRPELLSSVLLRQNPHNVEEWHRRVKLFEKDPARQVATYV
EAVKTVDPMKAVGKPHTLWVAFAKMYEKHNRLDSAEDIFKRATQVNYKAVDHLASIWCEW
AEMELRHNNFDKAIELMRQATAEPSVEVKRRAAAEGDEPVQMKVHKSLKLWSFYVDLEES
LGTLDSTRVVYERILDLRIATPQIILNYAYLLEEHKYFEDAFKVYERGVKIFKYPHVKAI
WVTYLTKFVHRYKRSKLERARELFHEAVQQAPPEEKKPLYLQWAKLEEDYGLAKRAMNVY
DESVRAVPGSEKMAMYEIYIARAAELFGVPRTRQIYEQAIESGLPDKDVLTMCMKFAELE
RSLGEIDRSRAIYVHASNYADPNNPDFWKKWNDFEIQHGNEDTFREMLRIKRTVAASRSQ
THFILPEYLMQKDHRLNLDEAVDTLKRAGVPEDEMAALERQLAPGPSTAPAATPTAPASA
NRTMNFVSAGVEAQADSSRQQAGNNEDIELPDESDDEEPDVQIAEKSVPAAVFGELGKRA
AEKNEESSGAQGNEQLGALERIKRRRQ
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaacctcgggtccggttgccgtggcgtcggcttcggcgtcggcgaaagccgcg
ccgtccccggacgtcgggatctcgccggacctgtacccgtcggaggacgacctggcctac
gaggaggagatcctgcgcgagcccttcaagctcaaggggtggtggcgctacctcgtggcc
cgcgccgccgcgccgttcgccaagcgcgccgtcatctacgagcgcgcgctcaaggcgctc
ccggggagctacaagctctggcacgcctacctccgcgaccgcctcgaccacgcgcgcccg
caccccatcgatcaccccgcctactcctccctcaacaacaccttcgagcgggcgctagcc
accatgcacaagatgccgcgcgtctgggtcctctacctcacctcactcctcgaccagcgc
ctgctcacgcgcgcgcgccgcgccttcgaccgcgccctccgcgcgctccccgtcacgcag
cacgaccgcatctggccgctgtaccttcgcctcgcttcgctcccggcctgccccgtagag
acgtcgctccgagtcttccgccgatatctccaattcgacccctcccacgccgaggacttc
atcaacttccttgtatccaccaaccactggcaggaggctgctaaccgtctagcttccgtg
ctcaacgacgatgggttccgctccgtcaaggggaaaacaaggcaccagctctggctcgag
ctctgcgatatcctcaccaaacatgctgatgaggttgccggcctcaaggtagacgccata
ctgcgtggtgggatacgcaagttcaccgatgaggtcggcaagctgtggacctcactggct
gattactatgttaggagaggcctttttgaaaaagctagggatgtattcgaggagggtgtt
tcttcagtggttaccgtcaaggagttcagcgtggtatttgaggcatatacacagtttgag
cagagtatgcttgcggcaaagctcgaggctgctgaggaagaaggggctgaggatgtgaac
gagggagggggcaagaagagcgggatcgataatttatcgaagaaattcctcgatggattc
tggttgaacgacgaagatgatactgatttgaggatggcaaggtttgagcggctgttggat
cgcagaccagagcttcttagcagcgtgctgttgcgacagaatccacacaatgtggaggag
tggcacaggagggtgaaactctttgaaaaggatcctgcaaggcaagtagcgacatatgtt
gaggccgtgaaaactgtagacccgatgaaggcagtcgggaagccccatactctgtgggtg
gcatttgcaaagatgtacgagaaacacaatcgtctagatagtgctgaagatatcttcaaa
cgggctactcaagtgaattataaggcagttgaccacttagccagtatctggtgtgagtgg
gcagagatggagctacgccacaacaattttgacaaggctattgagctgatgaggcaagca
acagcagagccctctgttgaagttaagcggcgggctgctgctgagggggatgagcctgtc
caaatgaaagtgcacaaatctttgaaactgtggagcttttatgttgatctggaggagagc
cttggaaccttagactctacacgtgtagtttatgagagaatactggatttacgaattgcc
actccacagataattctcaattatgcatatcttcttgaggagcacaagtatttcgaagat
gcatttaaagtgtatgaaaggggcgtgaaaatattcaagtatccccatgttaaggccatt
tgggtaacctaccttacaaagtttgtacatagatacaagagaagcaagttagaacgagca
agagaacttttccatgaagctgtccaacaggctcctccagaggaaaagaagcccctatat
ttacaatgggcaaaactggaagaggactatggtcttgcaaaacgtgctatgaatgtatat
gatgaatctgtaagagctgttcctggcagtgaaaaaatggccatgtatgaaatctatata
gcacgtgctgccgaactctttggtgttccaaggacaagacaaatatacgagcaagcaatt
gaatctggcctcccagacaaagatgttctgacaatgtgcatgaagttcgctgaactagag
agaagccttggtgaaattgatcgttcgcgtgccatctatgtgcatgcatccaactatgct
gatccaaataatcctgacttttggaagaagtggaatgactttgagattcagcacggtaac
gaagacacattcagggagatgcttcgtatcaaacggacagtggctgctagccgtagtcag
acacatttcatactaccggagtacttgatgcagaaggatcataggttaaacctggacgaa
gccgttgacactctgaaacgtgctggcgtccctgaggacgagatggcagccttggaaagg
caactggctcctggaccatccactgcaccagcagcaacaccaactgccccagcctctgct
aacaggacgatgaattttgtcagtgctggagtagaggcgcaggcagacagcagcaggcaa
caggctggtaacaacgaggacattgagctgcccgacgagagtgacgacgaggaacccgat
gtccaaattgcggagaagagtgttcctgctgcggtatttggtgagctcggcaagagagct
gccgagaagaacgaggaaagctcaggtgcccaaggaaatgagcagctgggcgccctcgag
aggataaagagacgacgccaatag
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