Zea mays (maize): 100384291
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Entry
100384291 CDS
T01088
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
zma
Zea mays (maize)
Pathway
zma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100384291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
100384291
03012 Translation factors [BR:
zma03012
]
100384291
Enzymes [BR:
zma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100384291
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100384291
Translation factors [BR:
zma03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
100384291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
R3H
DEAD
OB_NTP_bind
Helicase_C
HA2_C
Ank_2
HA2_N
nSTAND3
ATPase
AAA_22
AAA_19
Ank_5
Ank
AAA_25
ResIII
Rad17
AAA_7
AAA_23
Ank_3
PhoH
NPHP3_N
R3H_PUS7L
Motif
Other DBs
NCBI-GeneID:
100384291
NCBI-ProteinID:
XP_008655318
LinkDB
All DBs
Position
8:complement(179426127..179456497)
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AA seq
1274 aa
AA seq
DB search
MVHLSGVPVRPNPLRYPLAVSTSSRFSFGAPEQRTIKRATAAQARHRRPPVQPNRARRIE
GASRPPSVLLDDDNEHEELMGRKGRKGKGAAAGGSAGMKEATLVRVSKALEDFRASNAEV
YTFEPDISKQERAAIHEMCRKMGMISKSSGNGERRRLSVYKRKQKRGPELEQGPSYLGFS
EEARHVLQDLFMHYPPGDADLSGDVDQSSSDKAANIKWRTDNAFCRPAMSKLDITKKVEM
LASKINGSEQLRKVMEDRTKLPISSFKDVITSTLENHQVVLISGQTGCGKTTQVPQYILD
HMWGKGESCKIICTQPRRISAISVAERISAERGEAVGDTVGYKIRLESKGGKNSSVLFCT
NGVLLRLLIGRGTNASKARNQKRSLDDAVLGITHIIVDEIHERDRFSDFMLTILRDLLPL
YPHLRMVLMSATIDAERFSQYFNGCSVIQVPGFTYPVKTFYLEDVLSILQSAGDNHLTSH
KTEGSVLTHDFKSSMDDSINLALVNDEFDPLLELISAEQNTEVYNYQHSETGITPLMVFA
MKGQLGDVCMLLSFGVDCSAQDHDGKSALDWAQQENQQEVCEVIKKHMECSSEKSTEDNE
LLNKYLASINPEHIDTLLIERLLRKICVDSNEGAILVFLPGWEDISQTRERLFASPFFQD
SSRFLVLSLHSMIPSSEQKKVFKRPPVGVRKIILSTNIAETAVTIDDVVFVIDSGRMKEK
SYDPYNNVSTLHASWVSKASARQREGRAGRCQPGTCYHLYSRFRASSLPDYQIPEIKRMP
IEELCLQVKLLDSNCRIADFLKKTLDPPIPETVRNAIAVLQDLGALTQDEQLTELGEKLG
SLPVHPSTTKMLLFAILMNCLDPALTLACAADYRDPFVLPVAPDERKRAAAAKVELASLY
GGFSDQLAVVAAFDFWRHAKDRGQDSQFCAKYFVSSNIMNMLSSMRKQLQNELSQRGFVP
ADASACSLNSKDPGIMRAVLMAGAYPMVGKMLPPRKNARKSVLETASGAKVRLHPHSCNF
NLSFSKSSGNPLLIYDEITRGDGGMYIKNSSVVGSYPLLLIAAEMVVAPPDDDSDEDEED
SSEDEAEESTLVQHKEEIMSSPDSIVSVVVDRWLRFDATALDVAQIYCLRERLASAILFK
VKHPQDVLPPALGASMYAITCILSFDGLPSMVPPNDLSANRGSGQDLAEASKFSQGRRAG
YIPPSGFLMSLLADRTHNAPSFQNSSNHPGGGSAHTRPSRAPVGRFDRSRRPFRNSGPGT
SAPRSFKRQRDAPR
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggtccacctgtctggtgtgcccgttcgtccaaacccgctgcgctacccgctcgccgtc
tcgactagctctaggttttcattcggcgcaccggaacagcgcaccatcaagagagcgacc
gccgcacaggcgcgacaccgccgcccgccggtacagccaaaccgagctcgccgcatcgaa
ggggcttcccgaccgccgagcgtgcttctagacgacgacaacgagcacgaggaactgatg
gggcggaaggggcggaaggggaagggcgcagcggccggggggagcgccggcatgaaggag
gcgacgctggtgcgcgtctcaaaggcgctcgaggacttccgcgcctccaacgccgaggtg
tacacatttgaacctgatatatccaaacaagagcgagctgcaatccatgagatgtgtagg
aaaatgggcatgatatccaaaagttctgggaacggggaacgtcgacgcctttctgtttat
aaaagaaaacagaagcgggggcctgaattggaacaaggccctagctaccttgggttttct
gaagaggctaggcatgttttgcaggatttatttatgcattatcctcctggtgatgctgat
ttaagtggggatgttgaccagagttctagtgataaggctgcaaacatcaaatggagaaca
gataatgcgttttgcaggcccgcaatgagtaaacttgatataacgaagaaagttgagatg
cttgcctcaaaaataaatggatccgaacagttgagaaaggtcatggaagatagaacaaaa
cttcctatttcatctttcaaggatgtcatcacttcaactttggaaaatcaccaggtggtt
cttatttctggacaaacaggctgcggtaaaaccacccaggtgcctcaatacatcttggat
catatgtggggcaagggtgaatcatgtaagatcatatgcactcaaccacgtcggatatca
gctatttcagttgctgagcgaatctctgctgaaagaggtgaggctgttggtgacacagtt
ggatataagatacgtttggagtcaaaaggcgggaagaattcatcagtcttgttctgcaca
aatggtgttcttttgagattattgataggaagaggaactaacgcttcaaaagcacgaaac
cagaagcgctcattagatgatgcagttttgggaataacgcacatcattgtggatgaaatc
catgaaagggataggttttctgatttcatgctgactattctaagagacttgttgcctttg
tatcctcatcttcgtatggtactcatgagtgcaacaattgatgctgagcgtttttcgcaa
tatttcaatggatgttcggtcatacaagtccctggttttacctatcctgtcaaaactttc
tatttggaggatgtgctttctattctgcagtctgcaggtgataaccatcttaccagtcat
aaaacagagggcagcgttttaactcacgatttcaaaagctcaatggatgattcaattaat
ctggctttggtcaatgatgaatttgatcctcttcttgagcttatttctgcagagcagaac
acagaagtctacaattaccagcattcagagactggtataactcctttaatggtttttgct
atgaagggtcagcttggggacgtctgtatgcttttatcttttggtgtggattgttcagca
caggatcatgatggaaaatccgcattagattgggcacaacaagagaatcaacaagaggtc
tgtgaagtaataaagaaacatatggagtgtagttcagaaaaatcaactgaagataacgag
ctgcttaacaagtacttggcatctattaatccagagcacattgatactctgctaattgaa
cggctgcttcgaaaaatttgtgtggattccaatgaaggagccatcttggtattccttcct
ggctgggaagatatcagtcaaacacgtgaaagattatttgcttctccattctttcaggat
tcatcaagatttcttgtgttgtctcttcattctatgatcccgtcctcagagcagaaaaag
gttttcaaacgtccaccagtgggggttcgtaaaattattctctcaactaatattgcagag
actgctgtgacaattgatgatgttgtgtttgtcatagatagtgggagaatgaaagagaaa
agttatgatccatacaataatgtgtccacacttcatgcttcttgggtttcaaaagccagt
gcaagacaacgcgaagggcgtgctggccgatgtcagccaggaacttgctatcatctttac
tcaaggtttagagcttcatccttgccagactaccaaattcctgaaataaaaagaatgccc
attgaggaactttgtttgcaggtcaaactgcttgattcaaactgcagaatagcagacttt
ctgaagaaaaccttggaccctccaattccagaaactgtaagaaatgctattgctgtgctt
caggatcttggtgctttaacacaagacgaacaactaacagaattaggagaaaagctgggt
tccctgccagtccatccatccaccaccaagatgctcctgtttgctatattaatgaactgc
ctggatccagcattgacattggcatgtgcagctgattatagagatccatttgtccttcca
gtagcgcctgatgagaggaaaagggcagctgcagcgaaagttgagcttgcttcgttgtat
ggtgggttcagcgaccaacttgctgttgtcgcggcatttgacttctggaggcatgccaaa
gatagaggccaagattctcaattttgtgcgaagtactttgtctcttcaaacatcatgaat
atgctatcaagcatgaggaaacaacttcagaatgaactgtctcaaagagggtttgtccct
gcagatgcatctgcctgcagcttaaactctaaagatccaggtatcatgcgtgctgttctt
atggctggtgcttacccaatggtagggaaaatgctccctcctcgcaaaaatgctagaaaa
tcagttctggaaacagcgagtggtgccaaagttcgtctgcacccacactcctgcaacttt
aacctatctttcagtaaatcttctgggaatccactgctgatatacgatgagatcactcga
ggtgatggtggaatgtatataaaaaattcttcagttgttgggtcatatcctttgcttcta
atagctgcagaaatggttgttgctccacctgatgatgatagtgatgaagatgaggaagat
tctagtgaggatgaagctgaggaaagcacattggtacagcacaaagaagagattatgtct
tcacctgacagcattgtttcagttgttgttgatcggtggctccggtttgacgctacggct
ctggatgttgctcaaatatactgcttaagagaacgtctagcatctgctattcttttcaaa
gtgaaacatccacaagatgttctacctcctgcgcttggagcgtcaatgtatgccatcaca
tgcatcctttcattcgatggtttgccttctatggttccacctaatgacctttcagcaaac
cgaggttcaggccaggatttagcagaagctagcaagttctctcagggaagaagagcgggt
tatattccaccaagtggttttctgatgtccttgttagctgataggacccataatgcacct
tctttccagaactcatctaaccatccaggaggtggttcagcgcatactcggccatccagg
gctcctgttggtaggtttgatcgatctcggcgacctttccgcaattctggacctgggact
tcagcaccacgttctttcaaaaggcagcgcgacgctccacggtga
DBGET
integrated database retrieval system
