Zea mays (maize): 100384536
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Entry
100384536 CDS
T01088
Name
(RefSeq) uncharacterized protein LOC100384536
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
zma
Zea mays (maize)
Pathway
zma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100384536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
100384536
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
100384536
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-GeneID:
100384536
NCBI-ProteinID:
NP_001170525
UniProt:
C4IYF9
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Position
1:12184186..12192160
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AA seq
666 aa
AA seq
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MDEPEKVRGREDAASGREAGGAEEAGDGFQLVIHGKKKKRAASGQDCGTAGSGSGAGAGP
VRALTREKGAAPAPGAKAKVPFHDPSIPRPQDVYKIRVDNYKPFEHVWLERSEDGTRRVH
PLENLPVEQFVDRNVPDREPVKPADLEDTPFTLVQDHKGLTELAKKLKSVTEFAVDLEHN
QYRSFQGLTCLMQISTRTEDFIVDTLKLRIYIGLYLQEPFKDPTKRKVMHGADRDIMWLQ
RDFHIYVCNLFDTGQASRVLQMERNSLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIKY
AREDTHYLLYIYDLMRQRLQRESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYLHIYG
LQEHELDARQLAVVAALHEWRDRIARQEDESTGYILPNKALIEIAKQMPTDVGHLKRIVK
SKYPYVESNLELIAYTVWNALEYSYAFEGIAEQLKKERLEQVALKSGQTSDEVTPLDADI
DRSNFDSSDQSANVNVASGSRAGFMSEAALISSIHLEDKTQTMSSVKTSQTLLGQIRPVN
KDVLSNNIHQQAIQDLSLTLKALKGNLASGGESNEQAGINVENFRSSVFPSRQLSGEVKP
FYPNPGMHSENVWIQTTQTNETMKLCNTTYYRQLPGHSTESINQRSTGSFQSSVRRQSFP
PSSYKK
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggacgagcccgagaaagtgaggggcagggaggatgcggcgtcgggccgcgaggctggc
ggcgccgaggaggccggggatgggttccagctcgtgatccatggcaagaagaagaagagg
gcggccagcggccaggactgcgggactgctggctctggctctggcgctggcgccgggcca
gtgcgggcgttgaccagggagaagggagccgcgccggcgccgggggccaaggccaaggtg
cctttccacgatccaagcattccccggccgcaggacgtatacaaaatcagagtggataac
tacaagccattcgagcatgtctggctggagcgcagcgaagacggcacccgacgtgttcac
ccgctggaaaacctgcctgttgaacagttcgttgacagaaatgttcctgacagagaacca
gtgaagccagctgatttagaggatacaccatttacgctggttcaagatcacaaaggctta
acagaattagctaagaagttgaagagcgtaactgaatttgctgtagatctggagcataat
caatataggtcatttcagggcttgacctgcttgatgcagatttcaacaagaacagaagac
tttattgtggacactcttaagctacgcatatacattggtctctatttgcaagagcctttc
aaagatccaacaaagagaaaggtaatgcatggtgcggatcgtgatataatgtggctccag
cgggacttccacatctatgtgtgcaatctttttgacacaggacaggcttcaagggtctta
cagatggagagaaacagccttgagcacctattgcttcatttttgtggagtaacagcaaag
aaggagtatcaaaatgcagactggaggtcgagaccacttcctgatgaaatgatcaagtat
gctagagaagatacacactatctgttgtacatatatgatttaatgagacagagactacag
agggagtcaacatttgaaaatgatcttcttctagaggtccataagcgcagtaatgaaatt
tgcttacagttctatgagaaggagcttctgacagatacatcctatctccacatatacggg
ttgcaggaacatgaactggatgcaagacagctggctgttgttgctgctctacatgagtgg
agagatcgtatagctcgtcaggaagatgagagtactggttatatactgccaaataaggct
ttaattgagatagcaaagcagatgcctacagatgttggacatttgaaaagaattgtgaaa
tcaaaatatccatatgttgagagcaatcttgagctaattgcttacactgtctggaatgca
cttgagtattcttatgccttcgaaggaatagctgagcaactaaagaaggaacggctggaa
caggtggcactgaaaagtggtcagaccagtgatgaagtgactcctttggatgctgacatt
gataggagtaattttgattcatctgatcagtctgcaaatgtcaatgttgcttctggtagt
agggctggttttatgagtgaagcagctttgatcagcagcatccacctagaggacaaaact
caaaccatgtcctcagttaagacctctcagaccttgctaggccagatcagaccagtgaat
aaggatgtcctgagcaataatatacatcagcaggctattcaggacctaagtctcacttta
aaagctctaaaaggaaacttggcatctggaggagagtcaaatgagcaggctgggatcaac
gtggagaactttagatcttctgtatttccttcccggcagttgtctggtgaggtaaaacca
ttttatccaaatcctggaatgcacagtgagaatgtttggattcaaacaactcagacaaac
gagacaatgaagctgtgcaacacaacttactacagacagcttccaggacatagcactgag
tcaataaaccaaagaagtacaggaagtttccagagttcggtgagacgtcaatctttccca
ccttcaagttacaagaaatga
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