Zea mays (maize): 100384654
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Entry
100384654 CDS
T01088
Name
(RefSeq) uncharacterized protein LOC100384654
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
zma
Zea mays (maize)
Pathway
zma03013
Nucleocytoplasmic transport
zma03015
mRNA surveillance pathway
zma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100384654
09122 Translation
03013 Nucleocytoplasmic transport
100384654
03015 mRNA surveillance pathway
100384654
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
100384654
03041 Spliceosome [BR:
zma03041
]
100384654
Enzymes [BR:
zma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100384654
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100384654
Spliceosome [BR:
zma03041
]
Complex C
Other components
EJC/TREX
100384654
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100384654
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
100384654
NCBI-ProteinID:
NP_001170610
UniProt:
C4IZ62
LinkDB
All DBs
Position
8:complement(140314593..140333450)
Genome browser
AA seq
427 aa
AA seq
DB search
MGEAKDNEVYEEDLVDYEEEVENVIDGAPTNGSSDVVKKGYVGIHSSGFRDFLLKPELLR
AIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALV
LCHTRELAYQICHEFERFSKYLPELRVAVFYGGVHIKNHKDLLKNECPHIVVGTPGRILA
LARDKDLPLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLCECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSSDSDVLNQVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaggcgaaggacaacgaggtgtacgaggaggacctagtcgactatgaggaggag
gtggagaatgtcattgatggcgcccccaccaacggctcctcagatgtcgtcaagaagggg
tacgtagggatccacagctcggggttcagagacttcctgctcaagccagagcttcttcgc
gccattcaggattgcgggtttgagcatccttctgaagtgcaacatgagtgcatccctcaa
gctattcttggaatggatgtcatctgtcaagcaaaatctggaatgggtaagactgcagtt
tttgtcctgtcaactcttcagcagattgatcctgttgctggccaagtagctgcacttgtg
ttgtgccacacaagagaattagcttaccagatttgccatgaatttgagaggtttagcaaa
tacctgcctgaattaagagtagctgttttctatggtggtgttcacataaaaaaccacaag
gatctgctgaagaatgaatgcccccatattgtggttggcacgcctggaaggatactagct
ctagctagagataaggaccttcccttgaagaatgtgcggcatttcattcttgatgaatgt
gacaagatgctcgaatcacttgacatgcgcagagatgtccaggagatcttcaaaatgact
ccgcatgataagcaagtgatgatgttttcagcaacactcagcaaggagattcgacctgtt
tgcaagaggttcatgcaagatcctatggaaatttatgttgatgatgaggctaaactgacc
cttcatggtctagttcagcactatatcaaattaagtgaggcagagaagaaccgaaagttg
aacgatcttttagatgcactcgacttcaaccaagttgtgatatttgttaaaagtgttagt
agagctgcagaactcaacaaattgctctgcgagtgcaatttcccctcaatctgtatacat
tctggaatgacacaggaagagaggttgacacggtacaagaacttcaaggaaggacacaag
aggattcttgtggctactgatttggttggtaggggaatcgacattgaacgtgtcaacatt
gtcgtaaactatgatatgcctgattccgctgatacatacctgcatagggttggtcgggct
ggacgttttggtaccaagggacttgcaataacatttgtttcttcatctgattctgatgtt
ctcaatcaagtgcaggagaggtttgaggttgacataaaggagctgcctgagcagattgac
acgtcgacatacatgccatcttga
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