Zea mays (maize): 103629640
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Entry
103629640 CDS
T01088
Name
(RefSeq) zinc finger CCCH domain-containing protein 45
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
zma
Zea mays (maize)
Pathway
zma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103629640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zma03021
]
103629640
03019 Messenger RNA biogenesis [BR:
zma03019
]
103629640
Transcription machinery [BR:
zma03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103629640
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
103629640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_3
TFIIA
zf-CCCH_4
Nitr_red_bet_C
Motif
Other DBs
NCBI-GeneID:
103629640
NCBI-ProteinID:
XP_020394913
LinkDB
All DBs
Position
6:complement(101013861..101020504)
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AA seq
647 aa
AA seq
DB search
MDDSDGGLSFDFEGGLDSAPASGGGGPVPSSTDPGAGVGGGGDGLGMHGRGRGRGSYRQT
VCRHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECREPDCAYKHSYDDVKECNMYK
MGFCPNGPNCRYKHIKLPGPPPSVEEVLQKILQMRSFNRYSQNRNNNYNHQGERPQHPQG
SGLPNQNSAENATAVDPPAGGQQAQTLNQQPPQQQQKPNTNDQAQGVSNGHQATRIATPL
PQGPSRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESTENVILIFSINRTRNFQ
GCAKMTSRIGGYIGGGNWKSAHGTAHFGRNFSMQWLKLCELSFQKTHHLRNPYNDNLPVK
ISRDCQELEPFIGEQLASLLYLEPDSELTAMLIAAEAKREEEKAKGVSADEAADNQDIVL
FDDNEEDEEEESEEEEEGAGREPQGRGGRGGRGMMWPHQMPMMRGPMMAGRGFPPNMMGF
GGGFGLPDPFGMPRGFPPFVGPRFPGDFARGPMPGMGFPGRPPQPFPLGLDMMMGPGRGP
LMGMGGPGPGRPGRPMGMAPFMPPLPPPSNRAAVKREQQRRPAGGGDRGGDRFETVSEQG
GRGHDNTGNSGADGARPQPGDRSGRSALQDDGSESEEETAPRRSRKR
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggacgacagcgatggcggactgagcttcgatttcgagggcggcctcgactctgcccca
gcttctgggggcgggggccccgtgccgtcctccaccgaccccggcgcgggtgtcggggga
ggcggcgacgggctgggtatgcacgggcgcggccgaggtcgcgggagctaccgccaaacg
gtgtgccggcactggcttcgcggcctctgcatgaagggcgaggcctgcggattcctgcac
cagttcgacaaggcccgcatgcccgtctgccgcttcttccgcgacttcggcgagtgccgc
gagcccgactgcgcgtacaagcactcgtacgacgacgtcaaggagtgcaacatgtacaag
atgggtttttgtcccaatggtcctaattgccggtataagcatatcaagctccctgggcca
ccgccttctgttgaggaagttcttcagaagattttgcagatgcgctcttttaacagatac
agtcagaatagaaataataattataatcatcaaggggagagacctcaacatccacaaggt
tctgggttgcctaaccaaaactcggcagaaaatgccactgccgtggatccaccagctggt
ggacaacaagcacaaacgctgaatcaacaaccaccacagcagcagcagaagccaaataca
aatgatcaggcccaaggtgtttcaaatggtcatcaagccactagaatcgccacacccctt
ccacaaggaccatctaggtacttcattgttaaaagttgcaatcgggagaatctggaaata
tcagttcagcaaggaatttgggctacacagaggagtaacgaggctaaactcaatgaagct
tttgaatccactgagaatgttattttgatattctcaattaatagaactcgcaatttccag
gggtgtgcaaagatgacttctaggattggtggctacattggtggtggaaattggaaatct
gctcatggaacagcacattttggtcggaacttctctatgcagtggcttaagctttgtgag
ttgtcatttcagaaaacccatcatctccgcaatccatataatgataacctccctgttaag
atcagcagagattgccaggaactcgaacctttcatcggtgagcagttggcttctctgctc
tacctggagccagacagtgaacttacggctatgctaatcgcagcagaggccaagcgagag
gaggaaaaagcaaaaggagtcagtgccgacgaggcagctgataatcaagatattgtgctg
ttcgacgataatgaagaagacgaggaagaggaaagcgaggaggaggaagaaggcgccggc
cgagagcctcaagggaggggaggaagaggagggagggggatgatgtggccgcatcaaatg
ccgatgatgcgtgggccgatgatggcaggccgtggcttccctcccaacatgatgggtttc
ggcggtggcttcggcttgccagacccattcggcatgccacgtggcttcccgcccttcgtt
gggccaaggttccctggagacttcgccagaggccctatgcccgggatggggttccctggc
aggcccccgcagcccttccctctgggcctcgacatgatgatgggccctgggcgtggtccg
ctgatgggaatgggcgggcctgggcctggacggcctggtcgccccatgggcatggcgccc
ttcatgcccccgctgccaccaccgagtaaccgtgctgctgtgaagcgggagcagcagcga
aggccagcgggtggtggtgaccgtggcggggacaggttcgagacagtgtctgagcagggc
ggcaggggccatgacaacactggaaactctggtgcagatggagccagaccccagcctgga
gacaggtctggtagaagcgcccttcaggacgacggcagcgagagcgaagaggagacggct
cccagacgatcaaggaaacgatag
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