Zea mays (maize): 103630584
Help
Entry
103630584 CDS
T01088
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
zma
Zea mays (maize)
Pathway
zma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103630584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
103630584
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103630584
mRNA degradation factors
5'-3' decay
Decapping complex
103630584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
103630584
NCBI-ProteinID:
XP_008649853
UniProt:
A0A1D6M803
LinkDB
All DBs
Position
6:complement(169588033..169600627)
Genome browser
AA seq
797 aa
AA seq
DB search
MRGVRADGGGGAFSSSTAENSCFDAAQYSFFGKAPMEGAELGGLLEGGVDGDGGGFGGHD
DAGYQFSSTGEEIDCMSNLSEIDDLASTFAMLNRNISGTRNPGIIGDRRSISRESSLTAD
WVQDADFSNWVDQDILDGDESLDSKQWCSQLQSSPHFGESKPLSRTSSYPNQPLQHRSSE
PILLHRSTSFTSYPPSGESPGLPYPAQGLTRHSSIPSPGAGHLMGSPSSSLSGSPYHMPG
LSHGLPYGRNMSYTTGDLSTNNVLQNEWSNQAGPLVFDHLNRRPSFLQPHLSLSSSSMSS
LLFSQQHQRLAPGQPPLQNYINMQPHLFHHHQPPDVPSPRDKRSRSGRGGKHNIRFSQQP
SDAGSQHSESSGIKFRSKYMSSEEIESILKMQHSANHSNDPYFDDYYHQACKAKRSVTFQ
KSNFCPMSIKDFPSKSRSGVDQHSYLQVDANGGVSFSAIRRPRPLLEADLPGSGDGFYDH
KSSKRSLEKEPMLAARITVEDSLRLLLVVDDIDRFLQSSQPQDSSFQLKRRREVLLEGLA
TSLQLVDPFGPNKHGHSGGLAPKDDLIFLRIISLPKGRKLLARYLRLLFSGSELTRIVCM
AVFRHLRSLFGGLPSDYSAAETTIVLAKAVSSCVRHMELSALSACLAAVVCSSQQPPLRP
LGSASGDGASLIIKSVLDRATELLADPHSAANYSRSARSLWHASFDAFFGLLTKYCDSKY
ESIVQRFAMQGSNSMGGPETTKAVSREMPVELLRASLPHTNEQHRQTLLDFARKSTHLPG
FSPTANRGLVNSESVPG
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgaggggcgttagggcggatggcggcggtggcgcgttctcttcttccaccgcagagaac
tcgtgcttcgatgcggcgcagtactctttctttggcaaggcgcccatggagggggcggaa
ctcggtgggttgttggagggaggtgtcgacggcgatggtggtggattcggtggacatgat
gacgctggttaccagttctcttctacaggcgaagagattgattgtatgagtaatttgtcg
gaaattgatgatcttgcaagcacttttgcaatgttgaaccgaaatattagcggaacaagg
aaccctggcattattggtgatagacgatcaatttcgagagaaagttctttgactgctgat
tgggttcaagatgctgacttctccaattgggtagatcaggatatactagatggcgatgaa
tccctggacagcaaacaatggtgctcgcagttgcaatcttcgcctcactttggagagtct
aaaccactgtctcgtacatcttcgtaccccaatcaaccactacagcaccgctcaagcgaa
cctattcttctacacagatctacctcgtttacatcctatcctccatcaggggaaagtcct
ggattgccttatcctgctcaaggtcttacacggcactcaagcattccatcaccaggtgct
ggtcacctcatgggttctccaagttcatcgctttctggttctccatatcatatgcctggt
ctatctcatggactaccttatggacgaaacatgtcttacaccactggagatctttcaacg
aacaatgtcctacaaaatgagtggtcaaaccaagctggcccacttgtttttgatcatctt
aaccgacggcccagttttttgcagccacacttatctctttcaagtagttcaatgtcttca
ttgcttttttctcagcagcaccagagattagcaccaggccagccgcctcttcagaattac
ataaacatgcagcctcacctgttccatcaccatcaacctcctgatgttccttcaccaaga
gacaaacgatcaaggtcaggaagaggaggaaagcacaacatacgcttttctcaacagcct
tctgatgctggtagccagcatagtgagagttcagggataaagttcagatccaagtacatg
tcatctgaagagatcgaaagtatcttaaaaatgcagcactctgcaaatcacagcaatgat
ccttactttgatgactactaccaccaagcttgcaaagccaaaagatctgtaacttttcag
aagtccaatttctgtcctatgtcaataaaggacttcccctcaaaatccaggtctggtgtt
gatcagcattcatatctacaggttgacgctaatggaggagtttcattctctgccatacgt
agacctcgtcctcttcttgaagctgatttgcctggatctggtgatggtttttatgatcat
aagtcatccaagaggtcactggagaaagaaccaatgcttgcagccagaataaccgttgaa
gattctcttcgtcttcttctggttgttgatgatattgatcggtttttacagtctagccag
ccacaggacagcagtttccaactgaagcgaaggcgagaggtcctgcttgaaggcttagct
acatcactccagcttgttgacccttttggccccaacaaacatggccattcgggtgggttg
gcccctaaggatgacctaatttttcttcgtattatttctctgcccaaaggacgtaagctt
ttggcacgctatcttcgacttcttttctctggaagtgagctgacccgaatagtctgcatg
gctgttttccgacaccttaggagcttgtttggtggcttaccgtcagactatagtgctgca
gaaacaaccatcgttcttgccaaggctgtttcctcttgtgtgcgccatatggaactcagt
gctctcagtgcctgtctcgcagctgttgtctgttcttcgcagcagccacctctccggcca
ctcggtagtgcctctggtgatggggcctctctgataattaaatctgtgctggatagagcg
accgagctactggcggatccccattccgcagccaactacagcagatcagcacgttcgctt
tggcatgcgtcatttgatgctttctttggactgctgacgaagtactgtgacagcaagtat
gaaagtatcgtgcagaggtttgccatgcagggatccaactccatgggaggacctgaaacc
accaaagcagtcagcagggagatgcccgttgagctgttacgtgcgagtcttcctcatact
aatgagcagcatcgtcagacactgctagattttgctcggaaatctacgcatctgcctggt
ttcagccctactgctaaccgtggacttgtcaattctgaatcagttccaggttaa
DBGET
integrated database retrieval system
