Zea mays (maize): 103633431
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Entry
103633431 CDS
T01088
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
zma
Zea mays (maize)
Pathway
zma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103633431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zma03041
]
103633431
Enzymes [BR:
zma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103633431
Spliceosome [BR:
zma03041
]
Complex C
Other components
Step II factors
103633431
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
KH_DEAH11
KH_DEAH11_1st
RRM_DEAH11
Helicase_C
IBR
OB_NTP_bind
DEAD
IBR_1
zf-RING_UBOX
zf-C3HC4_4
RRM_1
zf-RING_5
AAA_22
zf-C3HC4_2
AAA_19
Arc_MA
zf-C3HC4
zf-RING_2
HA2_N
Herpes_ori_bp
ABC_tran
AAA_29
AAA_30
Motif
Other DBs
NCBI-GeneID:
103633431
NCBI-ProteinID:
XP_020396611
LinkDB
All DBs
Position
7:complement(175273394..175284255)
Genome browser
AA seq
1752 aa
AA seq
DB search
MLRSQDRRPFRPPDRAPRPPHPHRDQHNHNEHRYQPLSHPHIDRRYSNEHRYQPRGQHQR
GCHVQPPLRPSQFEVFLVRPGPDLSAPTAIEVEALLAGLPSPAPASISVQSSGRHAARLV
FTSIPAAAAAARELWALRLEGLHLLTLDLPHPALAAHASPLIASLFASHASRLLDSDIMV
LSAARSAELEASVRDVKQRLGSPNRFRDFHQLDLEKKTLESEKEFVDSKIAEYKEAMWSI
QRAMLRGSGDKEEGVDLFAAVDDGEVDFVKVHMMLLRECRRLKEGLPIYAYRRRILNHIF
ANQVMILIGETGSGKSTQLVQFLADSGVAGGGSIICTQPRKLAAISLAHRVDEESKGCYG
DSSVLSYSTLLSSQGFGTKIIFTTDSCLLHYCMSDVNLDGISYIIIDEAHERSLNTDLLL
AMIKKKLLDRLDLRLIIMSATADADRLAEYFYGCQIFHVRGRTFPVEIKYVPDVSAEASL
NSVPSISSVASSTASYVTDVVQMVNIIHKNEEEGAILAFLTSQLEVEWACETFSDPNAVV
LPMHGKLSSLEQNLVFKSYPGKRKIIFCTNIAETSLTIKDVKYVVDCGLAKEYRFVPTSG
LNVLKVNWISQSSANQRAGRAGRTGAGKCYRLYPESDFGMMEVHQEPEIRKVHLGTAVLR
ILALGVTDVKCFEFIDAPDPEAIAMAVNNLEQLGAIECKRSGFELTDIGHDLVKLGIEPR
LGKIMLDCFSYGLMKEGLVLASVMANASSIFCRVGTNEEKYKADRLKVPFCHPDGDLFTS
LAVYKKWETGYGNKNTWCWQNSINAKTLRRCQETISELEKCLKHELNIIVPSYWSWNPEK
PTMHDTSLKKIILSSLRGNLAMFSGHENLGYKVISAGQRVQLHPSCSLFIYGSKPEWVVF
SEILSAVNQYLVCVTAVGLNEVLTVHPMSFIKQLEESKLQRKVITGIGNKSLRRFCGKSG
QNLQNIISLLRKDCRDDHIMVDLDFSSSEVLLFAKEHDMEKVFCKVNYALELEAKLLRDE
CDERRPGSSTIALFGSGAEIKHLELGKRYLTVEILHQNARVIDEKELVCLVDSLVPGIAN
FHKTGNFQTNLDETKWGRFTFLKPDYAEDAISKLNGIEFHGSLLKVSPVSIYSHSGLPFP
AVRAKVSWPRKASRGVALVTCASGEAEFIVKDCFALGVGGRYVNCEVSNRYANCVFVTGI
PLHVTEPELYDAFHSTTTRRILDIRLLRGQPTASSSVSECTEALMRAISLFMPNRNFPCQ
KFRVQVFPPEEKDLMMKATITFDGSFHREAARALDHLQGSVLPCCLPWQIIQCEHVFHST
VSCPMRIYNVISQDVGALLESFRSQKGVAYNLEKNENGNFRVKLTANATKTIADLRRPLE
LLMKGKIINHPDLMLSTVQLLWSRDGMEQLRSVERETGTYILYDRQSLNIKIFGSTDNVA
AAEEKLVHALVQLHEKKPLEVCLRGRNLPPNLMKEVIVKFGADLEGLKNEVPAVDLQLNT
RRQTLYVRGSKEDKQRVEGMISELITSSDHNAQLSSENACPICLCELEDPFKLESCGHMF
CLACLVDQCESAMKSQDGFPLRCLESGCNKLFLLADLRSLLPDKLDELFRASLNAFVASS
AGLYRFCPTPDCTSIYQVAAAGAQGDRPFVCGACSVETCTKCHLEYHPFISCEAYKEYKA
DPDATMLEWRKGKENVKNCPSCGFTIEKSEGCNHVECRCGSHICWNCLENFKSSEECYGH
LRSVHLSYADLM
NT seq
5259 nt
NT seq
+upstream
nt +downstream
nt
atgctccgatctcaggaccgccgacccttccgcccgccggatcgggctccacggcctccc
cacccccaccgcgaccagcacaaccacaacgaacaccggtaccagcctctctcccacccc
cacatcgaccgacgctacagcaatgaacaccggtatcagccccgcggccagcatcagcgc
ggttgccacgtgcagccgccccttcgcccgtcgcagttcgaggtattcctcgtccgcccg
ggccccgatttatccgcgccgaccgccattgaggtggaggccctcctcgcgggcctcccg
tcgccggccccggccagcatatccgtccaatcctccggccgccatgccgcgcgcctcgtc
ttcacctccatcccggccgccgcggccgccgcgcgcgagctctgggcgctccgcctcgag
gggctccacctcctcaccctggacctcccgcaccccgccctcgccgcccacgcctcgccg
ctcatcgcctcgctcttcgcctcccacgcctcccgccttcttgactctgacatcatggtc
ctctcggccgcccgctctgccgagcttgaggcgtccgtacgggatgtaaaacaacgtctg
ggctcgcctaatcgattccgcgacttccatcagctagacctcgagaagaagacactggag
tctgagaaggaatttgtcgactccaaaattgcggagtacaaggaggcgatgtggtcgata
cagcgggcaatgttgcgtggatcgggggacaaggaggagggtgtcgacttgtttgcggct
gtagatgatggggaggtggactttgttaaggtgcatatgatgctgctgcgtgagtgccgg
aggcttaaggagggcctgccaatctatgcataccgcaggaggattcttaaccatattttc
gccaaccaggtcatgattttaataggagaaacaggttctgggaagagcacacaattggtt
cagtttcttgctgactcaggtgttgctggtggtggttccatcatatgtactcaacctcga
aagcttgctgctatatctttagcacatagagtagatgaagaaagtaagggttgctatggg
gacagttctgtgttgtcatattcaaccttactaagttctcaaggttttggcactaagatt
atattcaccacggacagttgtcttttgcactactgcatgagtgatgtgaatctggatggc
atttcgtatattattatcgatgaagctcacgaaagaagcttgaatactgatcttctgtta
gctatgatcaagaagaagctgcttgataggctggatttgcggctcattataatgtctgct
actgctgatgctgacagacttgctgaatacttttatggctgtcaaatatttcatgttaga
ggacggacttttcctgttgaaattaaatatgtcccagatgtatcagctgaggcttccttg
aatagtgtaccaagtatttcttctgttgcttcctctactgcttcctatgttactgatgtt
gtacaaatggtaaacatcatccacaagaatgaagaagagggtgctatacttgcttttttg
acatctcaactggaagtagaatgggcctgtgaaacattcagtgatccaaatgctgtggta
cttccgatgcatggcaagctttcttctttagaacagaatcttgtcttcaaaagctaccct
ggaaagagaaagattatcttctgcacaaatatagctgaaacatcattgaccataaaagat
gtgaagtatgttgttgattgtggcttggccaaagaatacagatttgttcccactagtggt
ctcaatgtactgaaagtcaactggatttcccaaagctctgctaatcaacgtgctggccgt
gctggtcgaactggagcagggaagtgttacaggctctaccctgaatctgattttggtatg
atggaagtgcatcaagaacctgaaattcgtaaagttcatcttggcaccgctgttcttaga
atacttgctttgggtgttacggatgtaaagtgttttgagtttattgatgccccagatcct
gaggctatcgctatggctgtgaataatcttgaacaacttggtgctatagaatgtaaacgt
agtggatttgagctaactgacattggacatgatctggtcaaattgggtattgagccaagg
cttgggaaaatcatgcttgattgcttcagctatggtttgatgaaagaaggtttagtccta
gcctctgttatggcaaatgctagtagcatattttgtagagtgggtactaatgaggagaaa
tataaagctgaccgcctgaaagtccctttctgtcaccctgatggagaccttttcacctca
cttgctgtttataagaagtgggagactgggtatggtaacaaaaatacatggtgctggcag
aatagtatcaatgccaagaccctgaggaggtgccaggaaactatatctgaacttgaaaaa
tgtctaaagcatgagctaaacattatcgttccaagttactggagttggaaccctgagaag
cctactatgcatgatacatcgctaaagaagattattctatcatctcttagaggtaatctt
gctatgttttctggacatgagaatcttgggtataaggttatttcagcaggtcagcgtgtg
caacttcacccttcgtgctcattgttcatttatggcagcaaacctgaatgggtggtattt
tcagaaatcttgtcggccgtgaatcaatatttggtatgtgtaactgctgttggtcttaac
gaagtgcttacagttcaccccatgtcttttattaagcaactggaggagagtaaattgcag
aggaaagtgattactgggataggaaataaatcgctgagaagattttgtggtaaatctggc
caaaatctgcagaatattatctcacttctgagaaaagattgcagagatgatcacataatg
gttgatttagacttcagtagcagtgaagttttattatttgctaaagaacatgacatggaa
aaggtcttttgcaaggtcaattatgctttggaacttgaagctaaattgctgagagacgaa
tgtgacgagagaagacctggtagctctactattgcactatttggctctggtgctgaaatc
aagcatttggaacttgggaagagatatctaacagtggaaattctgcatcaaaatgctcgt
gttatagatgaaaaggaacttgtttgtttggtagattctcttgttcctggtatagcaaat
tttcataaaaccgggaattttcagacaaacttagatgaaacaaagtgggggaggtttacg
ttcctcaaaccggattatgctgaagatgctatttcaaaattgaacgggattgagtttcat
ggttccttactgaaggttagtcctgtaagcatttacagccactcagggctaccatttcct
gcagtaagagctaaagtttcttggccacgtaaggcaagcaggggagttgcacttgtaaca
tgtgctagtggtgaagctgaatttattgtaaaggactgctttgcccttggagttggtgga
aggtatgtcaactgtgaggttagtaataggtacgcaaactgtgtctttgtcacagggatt
ccattgcatgtaacagagccagaattgtatgatgcttttcatagtacaacaactaggaga
atccttgacatccgcttgcttagaggacagcccacagctagctcgtccgtttctgaatgt
acagaagcactgatgagagcgatatcactattcatgccaaataggaactttccttgccaa
aaattccgtgttcaagtgttccctccagaagagaaagacttaatgatgaaagctaccata
acctttgatggaagttttcacagagaggctgcaagagcactggaccatcttcaaggaagt
gttcttccttgttgtctaccttggcagataatccagtgcgagcatgtatttcatagtact
gtctcctgtccgatgcgcatttacaatgttatcagccaagatgttggtgctctacttgag
agcttccgtagccaaaaaggcgtggcatacaatttggagaagaatgagaatggaaatttc
cgtgttaagcttactgcaaatgccacaaaaacaatagcagatttgagaaggcctcttgag
cttctgatgaagggaaaaataataaaccatcctgatctgatgttaagcacagttcaattg
ctatggtcccgtgatggtatggaacaattgagatcagttgaacgggagaccggcacttat
attctgtatgacaggcaaagtctgaatattaaaatttttgggagcactgataatgtggct
gcagcggaggaaaaattggttcacgcacttgtacagctccatgagaagaagcctcttgag
gtttgtcttcgtggccggaacctcccaccaaacttgatgaaggaagtgattgtaaagttt
ggggctgatttagaaggactgaagaacgaggtccctgcagtagatcttcagttaaataca
cgaaggcagacactttatgttcgaggcagcaaggaggataagcaaagggtggaagggatg
atctctgaactgataacctctagtgaccataatgctcaactgtcgtcagagaatgcatgt
cctatttgcctgtgcgagctagaagatccctttaagcttgaatcatgtggccatatgttc
tgtttagcttgcttggtggatcagtgtgaatctgccatgaaatcacaggatggcttccct
cttcgttgcctcgaaagtgggtgcaataagctgttcctcctagctgatctgaggtctctg
ctgcctgacaagctggacgagctgttcagggcttccttgaatgcatttgttgcatctagc
gcagggttataccgtttctgccccacaccggactgcacatcgatttaccaagtagctgct
gcaggcgcacaaggcgacagaccctttgtctgtggggcttgctctgtggagacctgcacc
aagtgccatctcgagtaccatcctttcatctcctgtgaggcatacaaagagtacaaggca
gacccggatgcaactatgcttgaatggcgcaaagggaaggagaacgtgaagaactgccct
tcatgtggatttacaattgagaagagtgaaggctgcaaccatgttgagtgcaggtgtggc
agccacatttgttggaattgcctggagaacttcaagagcagtgaggagtgctatggccat
ctcagatccgtgcacttatcctatgcagatctgatgtaa
DBGET
integrated database retrieval system
