Zea mays (maize): 103634889
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Entry
103634889 CDS
T01088
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
zma
Zea mays (maize)
Pathway
zma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103634889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
103634889
03041 Spliceosome [BR:
zma03041
]
103634889
03009 Ribosome biogenesis [BR:
zma03009
]
103634889
03016 Transfer RNA biogenesis [BR:
zma03016
]
103634889
Enzymes [BR:
zma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103634889
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103634889
Spliceosome [BR:
zma03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103634889
Complex C
U4/U6.U5 tri-SnRNP related factors
103634889
Ribosome biogenesis [BR:
zma03009
]
Eukaryotic type
Pre-60S particles
Helicases
103634889
Transfer RNA biogenesis [BR:
zma03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103634889
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
103634889
NCBI-ProteinID:
XP_008655690
UniProt:
A0A1D6FFE4
LinkDB
All DBs
Position
8:19586951..19596117
Genome browser
AA seq
1004 aa
AA seq
DB search
MGEEAESNCKRKAPDSSVEEQPSLAPAPAQSQADPAAKRPNISRSCVHEVAVPNGYESVK
DEAVHGTLASPAFNGEMAKQYPFKLDPFQSVSIACLERNESVLVSAHTSAGKTVVAEYAI
AMAFRDKQRVIYTSPLKALSNQKYRELSQEFTDVGLMTGDVTLHPNATCLVMTTEILRAM
LYRGSEVIKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEW
ICSLHKQPCHVVYTDFRPTPLQHYMFPIGGSGLYLVVDENGQFREDNFAKLQDSFAKPNN
QLDGRKGGGPKASGRIAKGGSASGNSDIYRIVKMIMERKFQPVIIFSFSRRECEHHAMSM
SKLDFSTEEEKECIEQVFCNAIGCLVEEDRSLPAIELMLPLLKRGIAVHHSGLLPIIKEL
VELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIGSGEYIQMSGRAGR
RGKDERGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFRLSYYTILNLMSRVEGQFTAEHV
IRHSFHEFQYEKALPEIAQKITRLENEATLLDSSGETDLAEYHKLGLDISELEKKIMSEM
IRPERALLYLVPGRLVRVRDGSTDWGWGVVVNVVKKPPASGTLPPALSASRSNNYTVDTL
LHCSSNSSENGSRSKPCPPRPGEKGEMHVVPVPLPLVSGLSSVRINIPPDLRPPEARQNI
LSAVQELGKRYPQGLPKLHPINDMGIQEPELVDLVHKLEDLEQKQCSHRLHKSGQSEQEL
SWYQKKADLNTEIQQLKSKMRDSQLQKFRDELRNRSRVLKMLGHIDADGVLQLKGRAACL
IDTGDELLITELMFNGTFNDLDHHQVASLASCFVPCDKSSEQIRLRNELSRPMMQLQEAA
RKIAEVQRECKLEVNVEEYVESTCRPYLMDVIYCWSRGATFAEVMEMTDIFEGSVIRLAR
RLDEFLNQLRAAAEAVGEVNLEKKFKNASESLRRGIMFSNSLYL
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgggggaagaggcggagagcaactgcaagcgcaaggcgccggactcgagcgtggaagag
cagccgagcctcgcgccggcgccggcgcagtcgcaggcggacccggcggccaagcgcccg
aacatctcccgctcttgcgtccacgaggtagccgtcccgaatgggtacgagtcggttaag
gacgaggcggtgcacgggacgcttgccagcccggccttcaatggggagatggccaagcag
tacccgttcaagcttgaccccttccagagcgtatccatcgcttgcctggagcggaacgag
tccgtgcttgtctccgcgcacacttccgcggggaagaccgtcgttgcggagtacgccatt
gccatggcgttcagggacaagcagagggtcatctacacctccccgctcaaggccctgagc
aaccagaagtacagggagctcagtcaggagttcacagatgtcgggctgatgactggcgac
gtcacgctccatccgaacgccacatgcctggtcatgacgacagagatcctcagggcgatg
ctctacaggggctccgaggtgatcaaggaggttgcctgggttatattcgatgagatacat
tacatgaaggatcgtgagagaggggtcgtgtgggaggagagcatcattttcttgccccct
gccatcaagatggttttcctttcggctaccatgtcgaatgcgaccgaatttgctgaatgg
atatgcagcctgcacaagcagccctgtcatgttgtgtatacggacttcaggcccacacca
ttgcagcactatatgtttccaataggtggttctggtctttaccttgtagtagatgaaaat
ggccagtttagagaagataactttgcgaagctacaagactcctttgctaagccaaataat
caactggatggaaggaaaggtggtggacctaaagcgagtggccgaattgcaaaaggtgga
agcgcctctgggaattctgacatatacagaattgttaagatgattatggagcgcaagttt
caaccagtcataattttcagctttagtagaagagaatgtgagcatcatgccatgtctatg
tcaaaacttgacttcagcactgaagaagaaaaggaatgcattgagcaggttttctgtaat
gctattggttgtttagtggaggaagacagaagtttacctgctatagagttgatgttgcca
cttcttaaacgaggtattgcagtacaccattctggactacttccaataattaaggagcta
gtggaattgctctttcaagaaggtcttgtgaaagctctctttgctaccgagacatttgcc
atgggtcttaatatgcctgcgaaaacggttgttttcacgtctgtcaaaaaatgggatggc
gatagtaaccgctatattggttctggagaatatatacagatgagtggaagagctggccgg
cgtggcaaggatgaacgtggtatctgtgttataatgatagatgagaagatggaaatgagt
gttatcaaggacatggtgttaggcaaaccagcacctctagtcagtactttccgtctgagc
tactacactattctgaacttaatgagccgtgtggagggccaatttaccgctgagcatgtg
attaggcattcattccatgaatttcagtatgagaaggcattgccagaaatagctcaaaag
attacacggttggagaatgaagctaccttgcttgattcttctggcgagactgatcttgct
gaatatcacaaattggggcttgatatatctgaactggagaagaaaatcatgtctgagatg
attagaccagagagggctttgttgtatttggttcctggaaggctggttagagtgagggat
ggttcaacagactggggatggggtgtggttgtaaatgtagtgaagaaacctccagcatct
gggactctccctcctgcattaagtgcatcgcgcagcaacaactatacagtcgataccttg
cttcactgctcctctaattccagcgagaatggatcacgttcaaagccatgccctcctcgc
ccaggggaaaaaggtgaaatgcatgtggtgcctgtaccattgcctttagtatctggtcta
agcagtgttagaatcaacattcctcctgatctacgaccacctgaagcaagacagaatata
ctttctgcagtgcaagaactaggaaagcgctacccccaaggtcttccgaaactacatcca
atcaatgacatgggtattcaagaacctgaactagttgacttggtacataaacttgaagac
cttgagcagaaacaatgctctcaccgacttcataagtccggtcaaagtgaacaggaacta
tcatggtaccaaaaaaaagcagatctgaatactgaaattcagcaactcaagtcaaagatg
cgggattcacagctacaaaaatttagagatgaacttaggaaccggtcccgtgttctgaag
atgctggggcatattgatgctgacggtgttctccagttaaaaggacgtgctgcctgtcta
atagacacaggggatgaactgcttatcactgaacttatgttcaatggtacatttaatgat
cttgaccatcatcaagttgcctcccttgctagctgctttgtaccttgtgataaatcaagt
gagcagatacgcctaagaaatgaactttctaggccgatgatgcagcttcaggaggctgca
agaaaaatagctgaggtacaacgagaatgcaaactggaagtaaatgtggaggaatatgtt
gaatcaacctgcagaccctaccttatggatgtcatatactgttggtcaaggggagccacc
tttgcggaggtgatggaaatgaccgacatatttgaaggaagtgtcataagacttgctaga
aggctggatgaatttctgaatcagttgagagctgctgctgaagccgtgggggaggttaac
cttgagaagaagttcaagaatgcaagtgagagtttgcgtcggggtatcatgttctccaac
tcactgtatctgtaa
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