KEGG T01088: 103639820

Zea mays (maize): 103639820

Entry

103639820         CDS       T01088

Name

(RefSeq) probable CCR4-associated factor 1 homolog 11

K12581

CCR4-NOT transcription complex subunit 7/8

Organism

zma Zea mays (maize)

Pathway

zma03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:zma00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103639820
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zma03019]
    103639820
Messenger RNA biogenesis [BR:zma03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103639820
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     103639820

SSDB

Motif

Pfam:

CAF1

Other DBs

NCBI-GeneID:

103639820

NCBI-ProteinID:

XP_008660739

UniProt:

A0A804R4B7

LinkDB

Position

9:complement(23318975..23319865)

AA seq 296 aa
MAIYSQSVLVRAPPPLPCRFVPRPCYIMARPLLVFTPSGALLKAAVRDVWASNFDEELSN
LSAMLPRYPCVCVDTEFPGAVHDSDMPRYMRGPRESYELVKRNVDDLKLLQVGIALSGPA
GRFPIAWQFNIRGFDPALHPHAPASIAMLREQGMDFAMLNEFGIDPEDFAAGFRRSGLAC
GRLTWTAFSGSYDFGYLAKALTGGQPLPDTLDGFLALVRRLFGHSVFDVKHLARCCAMRG
GLEQVATALGVKRAVGRAHCAGSDSLLTTDVLLLMLHRFFRNVDVLAHAGTIVDLT

NT seq 891 nt +upstreamnt +downstreamnt
atggcgatatattcccagtcggtcctcgtccgcgcgccgccgccgctgccatgcagattc
gtcccccgtccctgttacatcatggcgcggcccctgctggtcttcacgcccagcggcgcg
ttgttgaaggccgccgtgcgcgacgtgtgggccagcaacttcgacgaagagctctccaac
ctatcggcgatgctgccgcgctacccctgcgtttgcgtggacaccgagttccccggcgcg
gtacacgactcggacatgccgcggtacatgcgcggcccgcgcgaaagctacgagctggtg
aagcggaacgtagacgacctcaagctgctgcaggttgggatcgcgctgtcgggccccgcc
ggccggttccccatcgcgtggcagttcaacatccggggcttcgaccccgcgcttcacccg
cacgcgccggcctccattgccatgctccgcgagcaggggatggacttcgccatgctgaac
gagttcggcatcgacccggaagacttcgccgccgggttccgccgcagcggcctcgcctgc
gggcggctcacctggaccgccttctcgggctcctacgacttcgggtacctcgccaaggcg
ctcaccggcggccagccgctgccggacacgttggacggcttcctcgctctggtccgtcgg
ttgttcgggcacagtgtgttcgacgtgaagcacctcgccagatgctgcgccatgcgcggg
gggctggagcaggtggccaccgcgctcggcgtcaagcgcgccgtcggccgcgcgcactgc
gccggctccgacagcctgctcaccaccgacgtcctcctgctaatgctgcatcgcttcttc
aggaacgtcgatgtgctcgcgcacgccggaaccatcgtagacctcacctag

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