Zea mays (maize): 103641822
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Entry
103641822 CDS
T01088
Name
(RefSeq) polyadenylate-binding protein 2
KO
K13126
polyadenylate-binding protein
Organism
zma
Zea mays (maize)
Pathway
zma03015
mRNA surveillance pathway
zma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103641822
09123 Folding, sorting and degradation
03018 RNA degradation
103641822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
103641822
03041 Spliceosome [BR:
zma03041
]
103641822
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103641822
mRNA cycle factors
Stress granule specific factors
103641822
Spliceosome [BR:
zma03041
]
Complex C
Other components
Complex C specific factors
103641822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_Nup35
RRM_5
RRM_occluded
RBD_DEAH11
RRM_3
RRM_7
BRAP2
DUF134
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
103641822
NCBI-ProteinID:
XP_020401644
LinkDB
All DBs
Position
10:complement(131404111..131410296)
Genome browser
AA seq
652 aa
AA seq
DB search
MSAQVAVVPNGGPGAVPAVVSPGAVGVAQPLPTTSLYVGDLEGAVSDSQLYELFSQAGQV
VSVRVCRDVTSRRSLGYAYVNYSNPLDAARALEVLNFAALNNKPIRVMYSNRDPSSRRSG
SANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAVDEAGQSKGFGFVQYDKEEAAQNAIK
SLNGMLINDKPVFVGPFVRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGDIT
SAVVMIGMDGKSRCFGFINFENPDAASHAVQELNGKKINDKEWYVGRAQKKSEREMELKR
RFEQSLKDAADKYQGLNLYLKNLDDSIGDDQLCELFSNFGKITSYKVMRDQNGLSKGSGF
VAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPAVPMTPTLAP
RLPMYSPMAPQQLFYGQAPPAMMPPQPGFAFQQQLVPGMRPGGPHMPNYYVPVVQQGQQG
PRPGIRRGAGAQGQQPVPPFQQQILPRGRMYRYPTGRNMPEAPAMPGVAGGMIQAYDMGG
FPVRDAALSPAAQIGTLTSALANANPEQQRTILGENLYPLVEQLEPNQAAKVTGMLLEMD
QTEVLHLLESPDALKSKVAEAMDVLRNVAHQQNPNLPTSQLAALSLTEGIMS
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgcaagtggcggtggtgcctaatgggggcccgggcgctgtccccgcggtggtg
tcgccgggagctgtcggcgtggctcagcctctcccgaccacgtcgctctacgtgggcgac
ctggagggggccgtctcggactcgcagctgtacgaactcttcagccaggcggggcaggtg
gtgtcggtgcgcgtctgcagggatgtcacctcgcgccgctcgctcggatacgcctacgtc
aactacagcaatcccttggatgctgcgagagcattggaagtgctgaactttgctgctctt
aacaacaagcctatccgggtgatgtattcaaaccgtgatccaagcagccgcaggagtgga
tctgctaacattttcataaaaaatcttgacaagacaatagacaataaaacccttcatgag
accttttcttcatttggtaccattctctcgtgtaaggtagctgtggatgaagcaggccaa
tccaaaggctttggttttgttcagtatgacaaagaagaagctgcgcagaacgctataaaa
agtcttaacgggatgcttataaatgataagcctgtttttgttggaccttttgttcgcaag
caagaaagagatcattcttttgacaagacaaaatttaacaatgtctttgtgaaaaatttg
tctgagtctaccacaaaggaagatttactcaaaatctttggtgaatatggggatattaca
agtgctgttgtgatgattggtatggatggtaaatcaaggtgttttggtttcatcaatttt
gagaatccagatgcagcttcccatgctgttcaggaacttaatggtaagaagataaatgac
aaagagtggtatgttggaagagctcagaagaagtcagaaagagagatggaactaaaaagg
agatttgagcaaagcttgaaagatgctgctgacaaatatcaaggactgaacttatacctc
aagaacttggatgatagcattggagatgatcaactttgtgaattgttctctaactttggc
aaaattacttcgtacaaggtgatgcgtgaccaaaatggtcttagcaaaggctctggattt
gttgctttctcaactcgtgaggaagcatctcaggctttaactgaaatgaatggcaaaatg
atatctggaaaaccattgtatgttgcatttgcacagcgcaaagaagatagaaaagcgatg
ttgcaggcacagttttctcagatgcgccctgctgtaccaatgacacccactctagcccca
cgccttccaatgtactctccgatggctcctcagcaactcttctatggacaagcgccacca
gctatgatgccccctcagccaggatttgctttccagcaacagcttgttccaggcatgagg
cctgggggtcctcatatgccaaactattatgttccggttgtccaacagggccaacagggt
ccacgcccaggtattaggcgtggagctggagcccagggccagcaacctgtgccaccattt
cagcagcagattcttccgcgaggacggatgtaccgttacccaactggtcgcaacatgcct
gaagctccagcgatgccaggggttgctggaggtatgattcaggcatatgatatgggaggc
ttccctgtgagagatgctgccttatcaccggccgctcaaattgggactctgacttctgcc
cttgcaaatgctaatcctgagcagcaaagaacgatacttggtgaaaacctatacccactg
gttgagcaactggaaccaaaccaagctgcaaaggtcactggaatgcttttggagatggat
cagaccgaggtcctccacctgctcgagtcccctgatgctctcaagtccaaggttgctgag
gcgatggatgttctccgcaatgtggcccaccagcaaaacccaaacctcccgaccagtcag
cttgccgcattatcactgaccgaaggcattatgtcctaa
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