Zea mays (maize): 103642014
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Entry
103642014 CDS
T01088
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
zma
Zea mays (maize)
Pathway
zma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103642014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
103642014
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
103642014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
SpoIVA_ATPase
Motif
Other DBs
NCBI-GeneID:
103642014
NCBI-ProteinID:
XP_008663551
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Position
10:complement(142498255..142504518)
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AA seq
682 aa
AA seq
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MPRKVVSGPDYDDDYDDYDEYDDDDDDDDEYDETRYGNNTPVMTGKETLKNSSSTVSVHW
TCSMCTFSNHESMVYCEMCGVFRETFVKSAKDGLLKDTAVAVSSEPRTSAASKNDSAKAP
VKTRAVNSDGDSMRKHASMSYDKANSTQLPSAGSSLGAEKKKKTPVLSEEVPVERIALLA
SDGFQSKGNQNSGASSSSQNDNVIQKLSSDVGQLNVNKNNVNVTKSCLPDEYKPEKWMLA
DLESRALSQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKYMHKNEKESKEKGKGSFAFAW
AMDESSEERERGVTMTVAVAYLETKKFRVVLLDSPGHKDFVPNMISGATQADAAILVVDA
STGSFEAGMDGEGGKSVGQTKEHAQLVRSFGVEQLVVAVNKMDAVDYAKERFDFIKLQLG
SFLRSCNFKDSAITWIPLSAVENQNLIKAPSDARLTSWYQGFCLLDAIDFLQLPSRDVSK
PLIIPICDVIKSQSTGQLAAYGKLETGAIQIGSKVLVLPSGQEATVKAIERDSNSCTVAR
AGDNVAICLQGIDGKQLIPGGVLCHPGFPVPVANHLELKVLVLDITTPILVGSQVEFHIH
HVKEAARVTKIVALLDKTGKPSKSAPRFLKSKQNSVIQVTLDGAVCVQEFSKSRALGRAY
LRSAGRTIAVGVVNRIIGQDQN
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcaaagttgtatctggacccgactacgatgatgactatgatgactatgatgag
tatgatgatgatgatgatgatgatgatgagtatgatgaaaccagatatggcaataatact
cctgttatgacagggaaagaaacattgaaaaattcctcaagtacagtgtcggttcattgg
acatgttccatgtgcacattcagtaatcatgaaagcatggtgtactgtgagatgtgtggt
gttttccgtgagacctttgtcaaatctgccaaggatggtctgttaaaagatacagccgtt
gcagtgtcaagtgagcctaggacatctgctgcgtcaaaaaacgattctgccaaggcgcca
gtgaagactcgtgctgtaaattctgatggtgattctatgagaaagcatgctagcatgtct
tatgataaagccaattccacgcagttaccatctgctggtagctcactaggtgctgaaaaa
aagaagaaaacccctgtactttctgaagaagtacctgtggagaggatagctctgttggct
tccgatggttttcagtcaaagggtaaccagaatagcggggctagcagttcttcgcagaat
gacaatgtgatccagaaactctcttctgacgtaggccagctaaatgtaaacaagaacaat
gtgaatgttacgaaatcttgtttgcctgatgagtataagcctgagaagtggatgttagct
gatctggagtcaagggcgttgagccaactgaaccttgcaatagtcggtcatgttgattcc
ggcaagtcgacactatctgggagattactgcatctcttaggaaggatatcaaaaaaatat
atgcacaagaatgaaaaggagtcgaaagaaaaggggaaggggtcatttgcttttgcatgg
gccatggatgagagcagtgaagaaagggaacggggtgtgacaatgactgtggctgtggct
tatttggagaccaagaaattccgtgtggttttgcttgactcacctggtcacaaagatttt
gtgccaaatatgatatctggtgcaacacaagctgatgcagctattcttgtcgttgatgct
tcaactggttcttttgaagctggcatggatggcgaaggaggaaaaagtgttggccagact
aaagagcatgctcagcttgttagaagctttggtgttgaacagcttgttgtcgcagtcaac
aagatggatgctgttgattatgcaaaagaaaggtttgatttcatcaagctacaacttggt
agtttcctgcggtcatgcaacttcaaggactcagctattacctggattcctcttagtgct
gtagaaaaccaaaatttgatcaaagctccttcagatgctcgtttgacctcctggtatcaa
gggttttgcctcttggatgctatagattttctgcagcttccttctcgggatgtttcaaag
cccttgattattccaatctgtgatgttataaagtctcagtcaacaggacaattggcagct
tatggaaaattggaaactggagccatccaaattggttctaaggtgttagttctaccttct
gggcaagaggcgactgtgaaagccattgagcgggactctaattcatgcaccgtagcgaga
gctggtgataatgtggcaatttgtttacagggtattgatggaaaacaactaatacctggc
ggggttctttgtcaccctggtttccctgtgcctgtagctaaccacttggagctgaaggtt
ctagtcctggacatcactactcctattcttgttggctctcaggtggagtttcacatacat
catgtgaaggaggctgcaagagtaacaaaaattgttgcattacttgacaagactggcaaa
ccaagtaaatcggcacctcgatttcttaaatccaagcagaattctgttatacaggtcaca
ctagatggagctgtctgtgttcaggaattctccaagagccgagctcttgggagggcatac
ttgaggtcggctgggcgcaccattgctgttggcgttgttaatcggataattggccaagat
cagaactag
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