Zea mays (maize): 103643471
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Entry
103643471 CDS
T01088
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
zma
Zea mays (maize)
Pathway
zma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103643471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
103643471
03012 Translation factors [BR:
zma03012
]
103643471
Enzymes [BR:
zma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103643471
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103643471
Translation factors [BR:
zma03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103643471
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
nSTAND3
ABC_tran
Motif
Other DBs
NCBI-GeneID:
103643471
NCBI-ProteinID:
XP_008664887
UniProt:
A0A1D6KTP8
LinkDB
All DBs
Position
1:238885214..238908610
Genome browser
AA seq
1034 aa
AA seq
DB search
MLLHSSACHGSRLLSPCSSSCSRHYLLSSFASTPLKTLNALRTLVVMSYRGGRGGGGPNS
HRGRGRGGGGGAGRRGGGGGRGEQRWWDPEWRAERLRQMHGEVEKVDENEWWNKIGQLRE
GSQQELVVKRNFGRDGQNILANMAQRQGIYFNAYNKGKTLVFSKVPLPDYRADLDDRHGS
TQKEIKMSNQTEARVEDLLSRSKWNNNSASTSTVSTRQIFPGASSSVVEPAAPIDKEKLS
SQLRELQNSRKTTASARSMQSFREKLPAFSMREGFLKAVAANQVLVISGETGCGKTTQLP
QFILEEEINSLRGADCNIICTQPRRISAISVAARVSAERGEELGEAVGYQIRLESKRSAQ
TRLLFCTTGVLLRRLVQEPDLIGVSHLLVDEIHERGMNEDFLIIILRDLLPRRPDLRLVL
MSATINAELFSMYFGDAPVMHIPGFTFPVAELFLEDVLEKTRYRINSERDNFAGSSRRKR
FSSVKSDPLSDVFEDIDITKEYGNYSSSTRQSLEAWSAAELDLSLVENTIEYICRYEAEG
AILVFLTGWDEISKLLDKIKGNNFLGSPNRFLVLPLHGSMPTVNQREIFDRPPANMRKIV
LATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQP
GFCYRLYPKIIHDAMPQFQLPEILRTPLQELCLTIKSLQLGAVSSFLAKSLQPPDPLSVK
NAIELLKTIGALDDMEELTSLGRHLCTLPLDPNIGKMLLMGSVFQCLDPVLTIAAALAYR
NPFVLPIDRKEEADAVKRSFAGDSCSDHIALVKAFVAWKDAKRSGRERTFCWESFLSPMT
LKMMDDMRNQFFDLLSDIGFVSKTAGVKAYNRYGNDLEMVCAVLCAGLYPNVVQCKRRGK
RTAFYTKDVGKVDIHPSSVNAFVNQFPLPFLVYSEKVKTASIYVRDSTNISDYALLLFGG
SLSPSKTGEGIEMLGGYLHFSAPKRTIELIQKLRGELDKLLQKKIEEPGLDIFSQGKGVV
AAAVELLHSQNFDH
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgcactcttctgcctgccacggcagccgcctcctgtccccttgcagcagcagt
tgcagccgccactacctcctctccagcttcgcgtccactcccctcaaaaccctaaacgcg
ctcaggaccctagttgtcatgtcgtaccgcggagggcgcgggggcggcgggcccaactcg
caccgcgggcgcgggcggggcggcggcggtggggcgggacgccgcggcggcggcggggga
cgcggggagcagaggtggtgggacccggagtggcgagccgagcgcctccggcagatgcat
ggggaggtggaaaaggtcgatgagaatgaatggtggaacaagattgggcaattaagagaa
gggtcccagcaggagctagtagtcaagcggaattttggacgggatggacaaaatatactt
gcaaacatggctcagagacaaggaatttactttaatgcatacaacaaagggaagacactt
gttttcagcaaggtacccttacctgattatcgagcagatctggacgacaggcatggatca
acacaaaaggagattaagatgtctaatcagacagaggcgcgagtcgaagaccttttgtcc
aggtcaaagtggaacaacaattctgcaagcacatcaactgtctcaacgagacaaattttc
cctggcgcatcctcgtctgtagttgaaccagcagcaccaattgataaagaaaagctcagt
tcccagcttagggagttgcagaattcaaggaagacgacagcaagtgctagatcaatgcaa
tcttttagggagaaattacctgcattcagcatgagagaggggtttctgaaagcagtggca
gccaatcaggttctggtcatttctggcgagacaggctgcggcaaaacaactcagcttcca
cagttcattctagaagaagaaataaacagcctccgcggtgctgattgcaacataatttgt
actcagccccgccgtatatctgccatttcagtagcagcaagagtatctgctgagagaggt
gaagaactcggcgaggctgttggataccagattcgccttgaatcaaaacggtctgcacaa
acacggttgctgttctgcactactggagttttgcttagaagactggttcaagagcctgac
ttaattggggtgagtcatttactagttgacgaaattcatgaacgcggcatgaatgaagat
tttctcatcataatactgcgtgaccttctaccaagacgtccagatcttcgccttgtactg
atgagtgcaactataaatgctgaactattttccatgtactttggagatgctccagtgatg
cacatcccggggttcacttttcctgttgctgagttgtttctggaagatgttctagaaaag
acacgttacaggatcaattccgaacgtgataattttgcaggtagttcaaggagaaagagg
ttttcatcagttaagagtgatccactatctgatgtttttgaggacattgacattactaag
gagtatggaaattacagcagttcaacaaggcagtcccttgaagcttggtctgctgctgaa
ctagatttgagccttgtggaaaatacaattgaatatatttgtcgctatgaagcagaaggt
gcaatccttgtgttccttactggctgggatgaaatttcgaagcttctggacaagattaaa
gggaataatttccttggcagtcctaatagatttcttgttcttcctttgcatggttctatg
ccaactgtgaatcaacgcgaaatttttgacagaccaccagctaatatgagaaaaattgtt
ttggcaaccaacattgcggagagtagtatcactatagatgatgttgtctatgtgattgat
tgtggtaaggccaaggagacaagctatgatgccttgaataagctcgcatgccttcttccg
tcatggatatcaaaagcttctgctcatcagaggagaggtcgtgcaggccgcgttcagcca
ggtttttgctatcggctctatccaaagatcattcacgatgcaatgccacagtttcagttg
cctgaaattctcaggactcctttgcaagagctatgccttaccatcaaaagcttacagctt
ggagcagtatcctcctttttagccaagtcactgcagccaccagatccactttctgttaag
aatgctattgagcttcttaaaaccattggcgcactggatgatatggaggagctcacttct
cttgggcgacatctctgtactctcccactggacccaaacatcgggaaaatgctgcttatg
ggatctgtattccagtgcctggatccagtattgacaattgctgctgctctcgcatatcga
aatccatttgtgctcccaatagatagaaaagaagaagctgatgctgtcaaaagatcattt
gctggtgactcgtgcagtgatcacattgctcttgttaaggcgtttgtagcatggaaggat
gctaaaaggagtggtagagaacgcactttctgttgggaaagttttctgtcccctatgacc
ctgaagatgatggacgacatgcgaaatcaattttttgatctactatctgatattgggttt
gttagcaagacagcaggagtgaaggcatataaccgctatggtaatgatctggagatggtt
tgcgctgtcttgtgcgctgggctgtacccaaatgttgtgcaatgcaaaaggcgaggcaag
aggactgctttctacaccaaagatgtgggaaaagtggacattcatccatcatcagtcaat
gcattcgtaaaccaattcccgttacctttcttggtttacagtgagaaggtgaagactgct
agcatttatgtaagggactcgacaaatatatcagactatgcccttctactctttggtggt
tcgcttagtccgagcaaaactggagaaggcattgagatgcttgggggttatcttcatttc
tcggctccaaagcgtaccatagagttgattcagaaattaagaggtgaattggacaaactc
cttcagaaaaagattgaggaacctggactcgacatcttttcgcaaggaaagggtgttgtg
gcggcagctgtagaactgctacacagtcaaaatttcgaccattag
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