Zea mays (maize): 103643788
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Entry
103643788 CDS
T01088
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
zma
Zea mays (maize)
Pathway
zma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103643788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
103643788
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103643788
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103643788
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Peptidase_M9_N
DUF4407
DUF6514
Motif
Other DBs
NCBI-GeneID:
103643788
NCBI-ProteinID:
XP_020402447
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Position
1:266244270..266267347
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AA seq
861 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPKEKAKAETRDWLNNVVSDLESQIDNFEAEIEGLSIKKGKQRPPRLVHLEKSITRHKA
HIKKLESILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVEDLYSTLPMEKVEA
LEDMVSLAPSSLVKGVASVPTTAVSSTKSSIATSLTQPTVSTAPSQSTSQDQTEDTASQE
SNSESVPQTPPPKGGNSGPSIPAVPIAVSTGSAAISVLAETISSPVRPIVPTTVATILSS
AIPRSAPENTSTVTSIPANLSITLKDDESMSFPPRRPSPAITEIGIGRGIARGTTSQALG
TAPITIGPVPGNGSVSALPGINDLSKRNILNTDEKINSGGLSQQLVMPLGSKVQPQQVPR
TNDAISSESANTNESPILGGRVFSPPVVSGVQWRPLGAAAFQNQSEISHFRGRPEISADH
REKYIQRLQQVQQQGGSLLNVSHITGINQKQFPTQQPNPLLQQFNSQSSSISSQVNLGVQ
GTDAGHIKSEEEEQLLAEDGVESSATTGANKQTSEDDTKIPYSNPSAPAAESNQLPRDTD
PSPGQPLQPGMSSSGVGVIGRRSVSDLGAIGDNLTGTSASSGHDQLYNLQMLEAAFHKLP
QPKDSERAKTYIPRHPAVTPASYPQVQPSIVSHPSFWERIGSDTLATDMLFFAFYYQQNT
YQQYMAARELKKQSWRFHRRYNTWFQRHVEPQVTTDEYERGSYVYFDFHVTEDGSGWCQR
IKNDFTFEYNFLEDELSVQTN
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccagccggaagctgcagggcgagatcgaccgcgtccttaagaaggtccaggag
ggcgtcgacgtcttcgacagcatctggaacaaggtctacgacaccgagaatgcgaaccag
aaggagaagttcgaggcagacctcaagaaggagatcaaaaagctacagcgctacagggac
cagatcaagacgtggatccagtctagcgagatcaaggacaagaaggttagtgcctcttat
gagcaggctctgatggatgcccgaaagcagattgaacgagagatggaacgatttaaagta
tgtgagaaggaaacaaaaactaaggccttctcaaaagaagggttaggtcagcaaccaaaa
acagatcccaaagaaaaggccaaagctgaaacaagagactggcttaataatgtggttagt
gatttggaaagccagattgataacttcgaagcagagattgaaggactttcaattaaaaag
ggaaaacaaagaccgcctcgattggtacatttagagaagtctattacgagacataaagct
catataaagaaattggagtcaatcttgagacttttggataatgatgagttgagtcctgag
caagtcaatgatgttaaagattttcttgatgattatgttgaacgtaatcaggaagacttt
gatgaattcagtgatgttgaggacctctatagcacattgcctatggagaaggttgaagca
cttgaagacatggtttcacttgctccttctagtcttgtcaagggtgttgcttctgttccg
actactgcagtttcgagtacaaagagttcgattgcaacttcacttactcagcctacagta
tcaacagctccttcacaaagtacatcacaagatcaaacagaggacacagcttcccaagaa
agcaatagtgaatctgtgccacaaacaccacctccaaaaggtggaaattctggaccttca
ataccagctgtgccaattgctgtcagtactggtagtgcagctatttctgtacttgcagaa
acaattagttcccctgtgcgaccaattgttcccaccacagtggctacaatactttcttct
gctattccacgaagtgctcctgagaatacatctacggttacctcaattcctgcaaactta
tctatcaccttgaaggatgatgaaagcatgagttttcctccacgacgaccatctcctgct
attactgaaattggaattggcaggggcatagctcgaggaacaactagtcaggcattaggt
acagctcccataactattggtccagtcccaggaaatggatcggttagtgcacttcctgga
ataaatgacttgtccaaaagaaatatattgaacactgacgagaagattaacagtggtggt
ctttctcagcagttggttatgcctcttggtagtaaagttcaaccccagcaggttcccagg
actaatgatgcaattagctctgaatctgctaacacaaatgaaagccctattctcggtgga
agagtattttctcctccagttgtttctggggttcaatggagacctctaggtgctgctgca
tttcaaaatcaaagtgaaattagtcattttcgtggaaggcctgagatttctgctgatcac
agggagaagtacatacaaagactgcagcaagtacagcagcaaggtggcagccttctgaac
gtttctcatataactggcataaatcagaagcaatttccaacacagcagccaaatcccctt
ctacaacagtttaattcacagagttcctctatatcttcccaagtgaatcttggagttcaa
ggaacagatgctgggcatataaaaagtgaagaagaagaacaacttttggctgaagatggt
gtggaatcttctgcaacaacaggagcaaataaacaaacaagtgaagatgacacaaagatt
ccatattcgaatccttcagcacctgcagcagaaagcaatcagctgcctagggatactgat
ccatcacctgggcagcctttgcaacctggaatgtcatcatctggtgttggtgttatcggc
cgaagaagtgtatctgatcttggtgcaatcggagataaccttactggaacttctgctagt
tctggtcatgatcagctttataacctgcaaatgctagaagctgcattccacaagcttcca
caaccaaaggactctgagcgtgctaaaacttacatcccgcggcaccctgcagttacccct
gctagctatccccaagttcagccatcaattgtatctcatccctccttctgggaaagaatt
ggtagcgacacattagctaccgacatgctattctttgcgttctattaccagcagaacaca
tatcaacaatacatggctgctagagaattgaagaagcaatcgtggagatttcaccggagg
tacaatacctggttccagcggcatgtggagccacaggttacgactgatgagtatgagcgg
ggatcatatgtatactttgatttccatgtcaccgaggatggctcaggatggtgccaaaga
atcaagaatgacttcacattcgagtacaacttcttggaggatgagctatcagtacaaaca
aactaa
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