Zea mays (maize): 103644768
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Entry
103644768 CDS
T01088
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
zma
Zea mays (maize)
Pathway
zma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103644768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
103644768
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
103644768
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_14
TPR_1
TPR_8
TPR_11
TPR_16
TPR_17
TPR_CcmH_CycH
TPR_7
TPR_9
TPR_12
TPR_15
Motif
Other DBs
NCBI-GeneID:
103644768
NCBI-ProteinID:
XP_020402015
UniProt:
A0A804LMY6
LinkDB
All DBs
Position
1:88543590..88551669
Genome browser
AA seq
1194 aa
AA seq
DB search
MPETAAEANLRRQLEQTLAAEPSSPLHHYNLGVFLWDRAEAEQEGDGEEARKLRAEASEH
FLAAAKLNPNDGVPFRFLGHHYARGGDNQRAVKCYHRAVTLNPDDSEAGDTLCGLLDVEG
KESLELAVCKEAAGKSPRAFWAFRRLGYLQVHQRKWSEGIQSLQHGIRGYPTCADLWEAL
GLAYHRLGMFTAAVKSYGRAIELDSSRVFALIESGNIQLMLGYYRKGVEQFRSALEMAPC
NHSAYFGLASALLAWARNCVTTGAFGWAASLLKEASEASRICTSLTGNLSCVWKLHGDVQ
LTLARCFPWVDGKIKRVMDAQMFKNSVQEWRNTCLLAANGAKLSYQRALHLTPWEANVHN
DMAICLDLICSMDDKNRFNPNVWELPEKMSLGALMLEPVNKDFWVTLGSMSSYLALKQHS
FIRALHLDMSFSEAWACLGKIYRQSGDKQLAKQAFDRARSIDPSLALPWAGMSAENYHQS
GSSPVNESFESCLRAVQILPLPEFQIGLGTIAARSSNLLSPQVLMAVRQAVQRAPHYPES
HNLNGLISEVRLDFRSAITFYLQARFALGMMYNSMSDNRQAFADVSVNLARALCKAGLAS
DAARECEELRCQGLLSVDGLQIYALALWKIGQSKEALSVSGSLAENLSGIKVESATAAWG
FICTLTYGISGKDSAAAMIQKLPDQLNYNSQLKFIISALDALHPTKRLQLPQLNMPPKRT
AYEVMSEVHSNIALGKAIGVGFDKPLRVDGSLSYLKKVLHMYPDCSLVRNQLGSLLLWSG
DWMASHKAIRVTSLSHGHTSSMGLRSPHHIQACAMVSCYATCCTYTKFSFATCEHQYLSG
PDAIHHLQRWVHCEPWNQDARYLLVLAIFQKAHEEKYPKHTCVILKKLIMQVLSNISNPH
EKEAMQYQVFLLLLLSSEVCLQSLDYENCITEAKEALKLTPSSRVDTFFANLQLCRAYVV
HGDLLNSRNEYMKCLRNHTNTEIGWVMLKQLESACSLEGFSDEIDIKLHECVKRNGSDSS
KWTSLFNLACAQCFLWGGNFESAEKALAQACSQVDPDSCILFLNGATCMEIARRFVAPQF
ISRAASSLRKAQQKSHASLPLVSLLLAQAEGSLGSKTKWERNLRLEWFSWPPELRPAEVY
FQMHLLSRQSSAAVSQQNQLVETIQSPELWLLRAIHLNPSCPRYWKALLQQIYV
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaaccgcggcggaggccaacctccgtaggcaactggagcaaaccctcgccgct
gaaccctccagcccgctccaccactacaaccttggcgtcttcctatgggaccgcgccgag
gcagagcaggagggtgatggggaagaggcgcggaagctccgcgcggaagcgtcggagcat
tttctcgcggcggccaagctgaatcccaacgatggcgtccccttccgcttccttggccac
cactatgcgcgcggcggtgacaatcaacgagcggtcaagtgctatcaccgtgccgtgacc
ctcaaccctgacgactctgaggctggtgacacactctgtggcttgctagatgttgaaggg
aaggagagcttggagcttgctgtctgcaaggaggcagctggcaagtcaccgcgtgcgttc
tgggcttttcggagacttggctatttacaggttcatcagaggaaatggtcagagggtata
caaagccttcagcatggaatacgaggttacccaacatgtgcagatttatgggaggcactt
ggtctggcataccaccgtttgggcatgttcaccgcagcagtaaagtcatatggacgagct
attgaacttgatagttccagggtctttgcattgatagaaagtggaaacatccagttaatg
cttggttactatagaaagggagtggagcagtttcgttctgctttggaaatggctccatgt
aatcattcagcatactttggccttgcttctgcattgcttgcatgggcaaggaattgtgta
actactggggcctttggttgggctgctagcctgttgaaggaagcttcagaagcttccaga
atttgtacttctttgactggaaacctttcatgcgtctggaaattgcatggagatgttcag
ctcacacttgcgagatgctttccatgggtggatgggaaaatcaaaagggtcatggatgca
cagatgttcaaaaattctgttcaagagtggagaaatacatgtttgttagcagcaaatggt
gcaaaactctcatatcaacgtgctttgcatcttactccctgggaagctaatgttcacaat
gatatggctatttgtcttgatctaatttgttctatggatgataaaaacagattcaacccc
aatgtttgggagctgccagagaaaatgtcactgggtgccttgatgttagaaccagttaat
aaggatttttgggttactctgggttcaatgtcaagttatctggctttgaagcagcattct
tttattagggcacttcatctcgatatgtcattttctgaagcttgggcatgccttggaaag
atttacaggcagtctggtgataagcaattggcaaaacaagcatttgatcgagctcgaagc
attgatccatcgttggccttgccatgggctggaatgtcggcggaaaattatcatcaatct
gggagcagtcctgtaaatgaatcttttgaaagctgcttgagggctgtgcagatcctacct
ctgccagagttccagattggtcttggaacaattgcagcccgttctagtaatcttctgtca
cctcaggtattgatggctgtaagacaggctgttcaacgagcacctcattatccagagtct
cacaatttaaatggcttgatttctgaagtgcgattagatttccggtctgcaatcacattt
tacttgcaagcgagatttgctttaggcatgatgtacaattccatgtcagataatagacaa
gcctttgctgatgtttcagtgaatcttgcccgtgcactatgcaaggctggtcttgcaagt
gatgcagcgcgggagtgtgaagagctgagatgtcaaggactgttgagcgttgatggattg
cagatatatgctctggcattgtggaaaattggacaaagcaaggaagctctttctgtatct
ggaagcttggctgaaaatttaagcggtataaaggtggagagtgccactgcagcttgggga
ttcatatgcaccttgacgtatggaatttctgggaaggactctgcagctgccatgattcag
aagcttcctgatcaactcaattacaactcacagttgaaattcattatctctgcattggat
gctttgcatccaaccaaacgtctccagctgcctcagttgaatatgcctcctaagcgtaca
gcttatgaagtgatgagtgaagtacactcgaatattgctcttgggaaggctattggtgtg
ggatttgacaagcctctgagggttgatggtagtttgtcttacctgaaaaaagtactgcac
atgtatcctgactgcagtttagtgagaaaccaacttggatccctgctgctgtggagtgga
gattggatggcttctcacaaagcaataagggttacctctctgtcacatgggcacacatcc
agtatgggcctaagatcaccacatcacattcaagcctgtgcaatggtttcttgctatgct
acctgctgcacgtacacaaagttctcttttgcaacatgtgaacaccagtacctaagtgga
cctgatgcaatacaccacctgcaaaggtgggttcattgtgaaccatggaaccaagatgca
cgctacctgcttgtacttgccattttccaaaaagcacatgaagagaagtaccccaaacat
acctgtgttattctgaagaagctcattatgcaagtgttgtccaatattagcaatccacat
gagaaagaagctatgcagtatcaggtgttcctgctacttcttctgtcatcagaggtctgt
ttgcaatctttagactatgaaaactgcatcaccgaagctaaagaagctctaaaactcacc
ccgtcaagccgtgtggatactttttttgcaaatttgcaactgtgtcgggcctatgtggtg
catggggatcttttgaactccaggaatgagtacatgaaatgcttgagaaaccatacaaat
actgagattggctgggtaatgctgaagcaacttgaatctgcatgttctttggagggcttt
tctgacgaaatagatataaaactgcatgaatgtgttaaaaggaatggcagcgactcatca
aaatggacatcccttttcaatctggcgtgtgctcagtgctttctgtggggtggaaacttt
gaaagcgctgaaaaagctcttgctcaggcatgtagtcaagtagatccggatagctgcatc
ttgttccttaatggtgcaacctgtatggaaatcgctcggaggtttgtagctcctcaattt
atatcccgtgcagcttccagcctcagaaaggcccagcagaaatcacatgcttcactacct
ctcgtgtccctgctactggcccaagccgagggtagccttggctccaaaaccaagtgggaa
agaaaccttcgcctggaatggttctcatggcccccagagctgaggcctgcggaggtgtac
ttccaaatgcatctgctgtcgaggcagtcgtctgcagctgtttctcagcagaaccagctg
gtggagacgatccagagccccgagttatggttgcttcgggcgattcacctgaacccgtcc
tgccccaggtactggaaggctctgctgcagcaaatatatgtgtag
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