Zea mays (maize): 103647268
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Entry
103647268 CDS
T01088
Name
(RefSeq) uncharacterized protein LOC103647268
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
zma
Zea mays (maize)
Pathway
zma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103647268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zma03021
]
103647268
03019 Messenger RNA biogenesis [BR:
zma03019
]
103647268
Transcription machinery [BR:
zma03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103647268
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103647268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-C2HC_2
Motif
Other DBs
NCBI-GeneID:
103647268
NCBI-ProteinID:
XP_008670042
UniProt:
A0A1D6ELX9
LinkDB
All DBs
Position
2:170311239..170317315
Genome browser
AA seq
1041 aa
AA seq
DB search
MRASAVPMEASASARRSAAGPDPRAKKPRLAPPPRDPRSYAATASSNGNTSAAEQALVDE
LLGQYRTALGELTFNSKPIITNLTIIAGENLQAAKPIAALICANILEVPSEQKLPSLYLL
DSIVKNIGKDYVKHFSARLPEVFCKAYKQVDPSIHHSMRHLFGTWKGVFPLPPLQMIEKE
LGFQSSANGSSSAAPSRTDSQSPRPSNSIHVNPKYLEARQQLNQPTKGILGSGAKTTVIA
DTGGDIERPNRLGTDRNAGRRLDASNARPNIQRTQRDPSSNSLHEKQAVRDVGGLGFSNI
SQQAVVGTGQVRSKPKAQDGIGGPYYASGVGSSEEQFDRRSNFYASKDARPSGSVRLESA
LLPTPSINADRVGKPSSNKSWKHSEEEEYVWDDVHSKAAEYGGSHNVIKGEWMSDDGNAK
FANLQRAKWADAGPVERIDPNTHKLDNVSRFGLGAGQERRISEYMDQEEYLLGKREVEAR
IDKEIRSDGQQFPAARGSPLWVSQEKTLLDIGLEPRISRFSTQPAERSTIYTGTMSAGIT
SSVPVGLSGNYAGRSSLDTANGMPIRSTEAFGQQKHRYWSSSPPQADTSSSTAPFARQGS
PNPAESDFYPSRSLSRQNPQEYSKRALPVLAKDSHVVVHNDGFTQGQPSLQATRQTQKYP
ILQSKSHIKPSDQLQASFSRENSPSLFRPSIELGEVSLPSDSTPISSDLTSASNLLASLV
KSGFKPNNHSDAQALGPSGPLPVASLSLQNAAGENTTLQAHTPNTSRPPLPPPPSTQSAE
KAAPLSSLLSSLVAKGLISSPAYDSSSAVISQPNKASSMNVKDATASAVPLLALRPSVGK
ASSNSDSSAPTNASLTKAIEIKMSDLIGLEFKPEKLRKYHEHVISSLFDDDQSHQCKTCG
NRFRLEELSLHTSSCGQRKSETIYTGIAPKRWYPSKNIYIDGSHEIEDSTEASDGDLGSA
EEVCEFMVPSDERQIICALCGEPFDDIYSFEKGDWMYKDAVFLDYPKGESSCRNSVEGEE
HVPIVHVRCMPRGSNDGMEVD
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcctccgcggtccccatggaggcctccgcttccgcccgcagatccgccgcgggc
cccgacccccgcgccaagaagccgcgcctcgcgccgccgcctcgggaccccagatcttac
gccgccaccgcctcctccaatggcaacacaagcgccgccgagcaagcgctggtcgacgag
ctgctcggccagtaccggaccgcgctcggggagctcaccttcaactccaagcccatcatc
accaacctcaccatcatcgccggcgagaaccttcaggccgccaagcccatagccgctctc
atctgcgccaacatcctcgaggttccaagtgaacagaaactaccatcactatatctactt
gacagtattgtaaaaaatattggaaaagattatgttaaacatttctcagcaagattacca
gaggtgttctgcaaggcatataaacaagttgatccttctatacatcatagcatgaggcac
ctttttggaacatggaaaggagtgtttcctctacctccgctccaaatgattgagaaggaa
cttggttttcagtcatctgccaatggatcatctagtgctgcaccatcaaggactgattct
caatccccgcgcccatccaatagcatacatgtaaatccaaaatatttggaagcgagacaa
caactcaatcaaccaactaaggggatacttggaagtggtgctaagacaactgtaattgct
gatacaggcggtgatattgagaggcctaataggctaggtactgatagaaatgcggggaga
cgattagatgcttctaatgctagacctaacatacaacgcactcagagggacccttctagc
aattctcttcatgaaaaacaggcagttagagatgtgggaggccttggattctccaacatt
tcgcagcaggctgttgtgggaactggtcaagttcgctcaaaacctaaagctcaagatgga
attggggggccttattatgcctctggtgttgggtcttctgaagaacaatttgacagacgc
agcaacttttatgcaagcaaggatgctcgaccatcaggatctgtacgtttggaaagtgca
cttcttccaactccatcaatcaatgccgatagagttggtaagccttcatccaacaaaagc
tggaaacactctgaggaagaagaatatgtctgggatgatgtacattctaaagcagcagaa
tatggtggtagccataatgtaataaaaggagaatggatgtctgatgatggcaatgctaag
tttgcaaacctccaaagggctaaatgggcagatgcaggacctgtggaacgtatagatccc
aacacacataaacttgataacgtgtcaagatttggacttggagcaggtcaagaaagaaga
atttcagaatacatggatcaggaagagtaccttcttggcaagcgtgaggtggaagcaaga
attgataaggaaattaggtctgatggacaacagttcccagcagctcgaggttctcctctc
tgggtgtcccaggaaaaaacactcctagacattgggttggagcctaggatatcaaggttt
tcaactcagccagcagagaggtccaccatttatactggcaccatgtcagcaggtatcact
tcatctgtacctgttgggttatcaggaaactatgctggaaggtcaagcctagatactgca
aatggtatgccaataagatcaactgaggcttttgggcagcagaagcatagatattggtca
tcttcccctccacaagctgacacatcttcatctactgcaccctttgcacgtcagggttct
ccaaatcctgccgagtctgatttttatccttccagatcactttctcgccaaaatcctcaa
gaatatagcaaaagagcattgccggtacttgctaaagattctcatgttgtggttcacaat
gatggatttactcagggccaacctagtctacaggcaacccggcagacacaaaagtaccct
atcttacagtcgaagtcgcatattaagccatctgatcaattgcaggcaagtttttcgcgt
gaaaattctccatcattgttcagaccttccatcgaacttggagaagtctctttacccagt
gactccacccccataagctcagatctgacaagtgctagtaatttgttggctagtctcgta
aagagtgggttcaaaccaaataaccacagtgatgcacaggctcttggtccaagtggacca
cttccagtggcttctttatcacttcaaaatgctgctggtgaaaataccactttgcaggca
catacaccaaacacttctcgtccaccattgccaccacctccatcaacacagagtgcggag
aaagctgcgccgctctcaagtcttctcagttccctggttgcaaagggattaatctcttct
ccagcctatgattcatcgagtgctgtcatttcacagccaaataaagcatcaagcatgaat
gttaaagatgccacagcttcagctgtgcctttgctagctctgagaccttcagttggtaag
gcgtcatctaattctgattcatctgctccaacaaacgcttcattaaccaaagctatcgaa
attaagatgagtgacctcattggcctggagttcaagccagagaaacttcgcaagtaccat
gagcacgtgattagcagcctctttgacgacgaccaaagccatcagtgtaaaacatgtggc
aataggttcaggcttgaagaactgagcttgcacacatcaagctgtgggcaaaggaagtct
gagactatatatactggtatcgcacctaaaagatggtaccctagcaagaacatttacatt
gatggatcacatgaaattgaggacagcactgaggcttctgatggagatttaggttctgca
gaagaagtgtgtgagtttatggtcccttcagacgagaggcaaattatctgtgcactatgt
ggggaaccatttgatgacatatattcttttgagaagggggactggatgtacaaggatgca
gtgtttttggattaccccaagggagaaagcagctgcagaaacagtgttgagggtgaagag
catgtgcccattgtccatgtaagatgtatgccaagaggctcaaacgatggcatggaggtt
gactag
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