Zea mays (maize): 103649879
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Entry
103649879 CDS
T01088
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
zma
Zea mays (maize)
Pathway
zma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103649879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
103649879
03012 Translation factors [BR:
zma03012
]
103649879
Enzymes [BR:
zma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103649879
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103649879
Translation factors [BR:
zma03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103649879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
T2SSE
AAA_19
nSTAND3
ATPase
AAA_16
PhoH
AAA_30
Myosin_head
Motif
Other DBs
NCBI-GeneID:
103649879
NCBI-ProteinID:
XP_008673793
UniProt:
A0A1D6MN07
LinkDB
All DBs
Position
3:complement(26859211..26882769)
Genome browser
AA seq
1239 aa
AA seq
DB search
MLLTSVLRGRVRLLHRHRSLTMPSPLFLSRNPNTSLGTTNPHLSSPPVSAAMSTTGVYVP
PMRRLRSVIASTNGSLAPPPSAAAQAQQTRTPEWLVDGRSLSPQSPPQLRRRDIPPLPRP
PLPEHYRQQSAGFARYAYDDFSEDDSDKDIDRTSVSSKGASTLDNVDEWKWKLHMLLRND
DEQEIISRERKDRRDFEQLAQLADRMRLHSRQYSRVVVFSKVPLPNYRSDLDDKRPQREV
SIPAGLQREVDALLAGYVARKGTYIGNFPSSAFSRSSSTDSFATDEGFFEQQDNQTSTSA
VMDRIQRRKSLQLRNQQAAWQESNDGQSMMEFRRSLPAYKEKQTLLEAISQNQVIVVSGE
TGCGKTTQLPQYILESEIDAARGATCSIICTQPRRISAIAVSERVAAERGEKIGESVGYK
VRLEGMRGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLL
PRRPELRLILMSATLNAELFSSYFGGAPMIHIPGFTYPVRSHFLEDILEITGHWLTPYNQ
IDDYGQEKSWKMQKQALQKRKSQIASVVEDAVEAADLRDYSSRTRDSLSCWNPDSIGFNL
IENVLCHICQKERSGAILVFMTGWDDINALKEQLQANPLLGNPSAVLLLACHGSMASSEQ
KLIFDKPEPGVRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWISK
ASARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLRLGSISE
FLSRALQSPESLSVQNAIEYLKVIGAFDQNEELTVLGKHLSMLPVEPKLGKMLIFGAIFN
CLDPILTIVSGLSVRDPFLTPFDKKDLAESAKLQFSCRDYSDHLALVRAYDGWREAERDR
AGYDYCWKNFLSVQTLKAIDSLRRQFLFLLKDTGLVDENMTMCNKWSRDENLVRAVICAG
LYPGVSSVLNKEKSISLKTMEDGQVMLYSSSVNGKETKIPFPWLVFNEKVKVNSVFLRDS
TAISDSILLLFGGCIKQGGLDGHLKMLGGYLEFFMNRDLASTYVSLKRELENLIHCKLQN
PRMDIQTSEELLSAIRLLVTEDPCSGRFVYGRQEPRSKKAKTMLSPSSLSEAGGNGGDNA
KNQLQTYLTRAGHSNPTYKTKQIKSYLFRSTVEFNGMQFVGQPCANKKLAEKDAASEALN
WLTGDGGAITDSRGAQDADPMSLLMQPPRRRRHSHRRRN
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atgctcctgacctccgtcctccggggtcgcgtccgccttctccaccggcaccgctccctg
accatgccctcccctctcttcctctccagaaaccctaatactagcctcggcaccactaac
ccccacctctcatcgccccccgtgtcggctgcaatgagcaccaccggagtctacgtgccg
ccgatgcggcggctccgctccgttatcgcgtccaccaacgggagccttgcgccaccaccg
tccgccgcggcgcaggcacagcagacgcggacgccagagtggctggtggacgggcgttcg
ctcagcccccagtcgccgcctcagctgcggcggcgcgatatacctcccttgccgaggcca
cccctgccagagcattaccggcagcagagcgctgggtttgcccgctatgcatacgatgat
ttctctgaggatgactcagataaggacattgaccgcacgtcagtttcgagcaagggtgca
tctactttagataatgttgatgaatggaaatggaaactgcatatgcttcttcgtaatgat
gatgaacaagagattatctcaagggaaagaaaggataggcgagattttgaacaactcgcc
caattggctgacagaatgcgcttgcacagccgtcagtattctagagttgttgtgttcagt
aaggttccattgcctaattatagatcagatcttgatgataaaagaccccaaagagaggta
tctatacctgctggcttgcaaagagaggttgatgctctgcttgcaggctatgttgcacgg
aagggaacatacattggcaactttcctagttcagctttctcacgatcaagcagcacagac
agttttgcaactgatgaaggcttctttgagcagcaagataatcaaacttccactagtgct
gtaatggacagaatccaaagaaggaaaagcctgcagttgcggaatcagcaggctgcttgg
caggaatcaaatgatggccaaagcatgatggagtttcgtcgcagtcttcctgcttataaa
gagaagcaaactttattggaagctatatcacagaatcaggtcattgtagtttcaggcgag
actggctgtggtaagacgacacaactaccacagtacattttagaatctgaaatcgatgct
gctcgtggtgctacgtgcagtattatttgcactcaaccaaggcgaatatcagcaattgct
gtgtctgaaagagtcgctgctgaaagaggcgagaaaattggtgaatcggttggctacaaa
gttcggctggaaggcatgagaggaagagatacgcgccttcttttctgcaccactggagtc
ctgttgcggagattgttggtggacaggaatttgaaaggtgttacccatgttattgttgat
gaaatccatgaaagaggcatgaatgaagattttcttcttattgtcttaaaggatcttctt
ccacgtcgccctgagctgaggcttatattgatgagtgcaacccttaatgctgagctattc
tcttcatactttggtggagcacccatgatacatatacctggttttacatatcctgtccgg
agtcattttctggaagatattcttgaaattactgggcactggttaactccatacaatcaa
attgatgactatggtcaagaaaaaagttggaagatgcaaaagcaagctctacaaaagcgg
aagagccaaatcgcttctgttgtggaagatgctgttgaagctgctgatttgagggactat
agttcgcgaactcgtgattccttatcctgttggaatcctgattcaattggttttaattta
atagaaaatgtcttatgccatatttgtcaaaaggaacgatctggtgcaattcttgtattt
atgactgggtgggatgacattaatgcattaaaagagcagctccaagcaaatccattgctt
ggaaatccaagcgcagttttgttgctcgcttgtcatggctctatggccagttcagagcag
aaattaatatttgataagcctgagcctggagtaaggaaaatagttcttgccacgaatttg
gctgaaactagtattactatcaacgatgtagtttttgttgttgattgtggcaaagcaaaa
gagacatcttacgatgcactgaataatactccctgtctgcttccaacctggatctccaag
gcttctgccagacaaagacgaggacgagctggccgagtccaaccaggggagtgctaccat
ctttatccacgatgtgtatatgatgcatttgctgactaccagttaccagaacttcttaga
actcctctccagtccctctgtttgcaaataaaaagcttgaggctgggaagtatatcagaa
tttttatccagagctttacaatcacctgaatctctatcagtacaaaatgccattgaatat
cttaaagtcattggagcatttgatcagaatgaagaattgacggttcttggaaagcacttg
tctatgcttccagttgaacctaagttaggaaagatgcttatttttggggctatttttaat
tgtctggatcccatattaaccatagtttctggacttagtgttagagatccctttttaacc
cccttcgataagaaagatcttgcagagtcagctaagttgcagttttcatgccgggactac
agtgatcatcttgcacttgttcgtgcatatgatggatggagggaggctgaaagagaccgt
gctggttatgactactgctggaaaaattttctttcggtgcaaacattgaaagcaatagat
tctcttcggcggcagtttctctttcttctgaaggatactggtttggttgacgaaaacatg
actatgtgcaataaatggagtcgtgatgaaaatctagttcgggcggtaatttgtgcagga
ctgtatccaggtgtttcctctgttttgaacaaggagaaatccatctccctcaagacaatg
gaagatggacaggttatgctttattcgagttcagttaatggtaaagaaaccaagattcca
ttcccctggctagttttcaatgagaaggtgaaagtgaattctgttttcctccgggattca
actgctatatctgattctatactgttgttattcggaggctgcataaaacaagggggcttg
gatggacacttaaaaatgcttggaggttatcttgagttcttcatgaatcgcgatcttgct
tcaacttatgtgagtttgaagagagaacttgagaatttaatccattgcaagctccaaaac
ccaaggatggatatccaaacgagtgaagagctgctatcagccatccgtttgctggtgact
gaggatccatgcagtgggcggttcgtgtacggccgacaggagccaagatcaaagaaagca
aagacgatgctttcgccatcctctctgagtgaggctggtggcaacggaggggataatgcc
aagaaccagctccagacttacctgacccgggccgggcacagcaaccccacctacaagacg
aagcagatcaagagctatctcttcagatcgacggttgagttcaacggcatgcagttcgtg
gggcaaccgtgtgcaaacaagaaacttgcggagaaagatgccgcgagcgaggcactgaac
tggctcacaggagatggtggagcgattactgactctaggggggctcaggatgcagacccc
atgtccttgctgatgcaaccaccgcgtaggcgtcgacatagccatcgtcggaggaactga
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integrated database retrieval system
