Zea mays (maize): 103653026
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Entry
103653026 CDS
T01088
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
zma
Zea mays (maize)
Pathway
zma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103653026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zma03021
]
103653026
03019 Messenger RNA biogenesis [BR:
zma03019
]
103653026
Transcription machinery [BR:
zma03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103653026
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103653026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
DUF6415
zf-C2H2_2
Motif
Other DBs
NCBI-GeneID:
103653026
NCBI-ProteinID:
XP_020408089
LinkDB
All DBs
Position
4:30856734..30866356
Genome browser
AA seq
960 aa
AA seq
DB search
MAGAAASPAAGHVVERFRSRLREEAGGGEPGAAAVVHVYAEALRELTFNCKPVITELTII
AGQHATLAAGGIADAICARVAEVPPDQILPSLYLLDSIVKNIGGEYVEHFATRLRSVFVD
AYYRVHPNQYTSMRRLFRTWWPVFPSSVLRSIEDDLQFSSSENNRPTTSTNLHQTESLSP
RPSHGIHVNPKYLEAQHKFKQANVVHQPAARDTRQMTDVQEDLINGLASNSSCERPSIFQ
KSSLQYADDPDQQETFRPLAGTRAASPHLLSTHASDMNLDGPLVNSRRNLSISPPLDVFS
RNVSPKRALERLPPSHSVLGPDPRKFTDRNGRLRWGLDDGAQRPTISMLDEEYRKQSARE
LIDAYGNCQGRDADERLPKVQRLDPNGMASRSSARNWLTSEEEEYSWEDMSPTLTDRVSS
SMPSFPPGTMRTGFPGANAGLLESDVGRHNFPSQATRLSVDGSPFNLEDRFSTASHVNMS
TRRYPSNFGVQNGALLKFQNSEHALNHGRIATMPAPPWQQPTGLPLQMQAPQHSSALDRL
PQPADSEMPVKRLDIRGTYNGLNVDRSLAEKHRSSPARAPTEWLPLHHTPSQTLPLIIPE
TKHVRSASDSLEISSFVSQGASSSVFVPHHQYDALDRKTGTRNLAQPPYQHQDLLLPSQQ
NQGTILGNQVHPHLPQQLHPHSHPHHQETFRSFAPGMTVSPFQGQGGNATMTPVSVLPTF
SVPPAVPPYGVLSAPGFPMPPLPPGPPPVPLQMGSSSSQVGGPQPFVSGLLSNLMRHGVI
SLEPPSQSQDSVGVDFNVDLKVRNEPVINALYQDLSRQCKTCGLRFKCQEEHRAHMDWHV
TKNRNSKNRKQSSRKYFVTVEEWLRAAETVGNDGVPAFVPSDPVPDRKEEREIAVPADEE
QTACALCQEPFEDFYSDETDEWMYRGAVYMNAPDGNIDGLERSRLGPIVHAKCRSGPSNT
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggccgcggcgtccccagcggcgggccacgtggtggagcggttccggtcgcga
ctgcgcgaggaagcgggcggcggcgagccgggcgccgccgcggtcgtgcacgtgtacgcg
gaggcgctccgtgagctaaccttcaactgcaagccggtcatcaccgagctcaccatcatc
gcgggccagcacgccacgctcgccgccgggggaatcgccgacgccatctgcgcccgcgtc
gccgaggtgccaccagatcagatattaccatctttgtatctgctagatagtattgtgaag
aacataggtggggaatatgtagagcattttgcaactaggttgcgaagtgtatttgttgat
gcatactacagagttcatccaaaccagtatacttcaatgaggcgcctctttcgtacctgg
tggccagtgttcccttcttctgtgcttcgcagcattgaggatgaccttcaattttcttcc
tcggagaataaccgccccaccacatcaacaaatctgcatcaaacagagtcgttatctcct
aggccatctcatggcatacatgtaaatcctaaatacctggaagcacaacataagttcaag
caggccaatgtggtgcaccagccagcagctcgggacactaggcaaatgactgatgtgcag
gaggatctgataaatggattagcatcgaatagttcgtgtgaacggccttcaattttccag
aaatcttctttacagtatgctgatgatcctgatcaacaagagacgtttcggcctcttgct
ggaacaagggcagcatcaccacatctcttgagtacacatgcatctgatatgaatctagat
gggccattagtcaattcaaggagaaacttgtccatatcaccacctcttgatgtgttctct
aggaatgtgtcccccaagagagcactagagaggctgccaccatctcattctgtattggga
cctgatcccagaaaattcactgatcgaaatggcaggttaagatggggtttggatgatggt
gcacaacggcctacaatcagtatgcttgatgaagagtacaggaagcaaagtgcaagggaa
cttattgatgcatatgggaattgtcaaggacgagatgctgatgaacgacttcctaaagtg
cagcgcctggatccaaatggtatggctagcagatctagtgcacgaaattggttaacttcc
gaggaagaagagtattcatgggaggatatgagcccaactttgactgatcgagtcagtagc
agcatgccatcttttcctcctggaaccatgagaactggatttcctggggcaaatgcaggg
ttactggaatctgatgttgggaggcacaatttcccaagccaagctactagattatcggtt
gatggttcaccgtttaatcttgaagataggttttcaactgcaagtcatgttaacatgtct
acaaggagatatccaagcaattttggtgttcagaatggagctcttttgaaattccagaat
tctgaacatgccctaaatcatgggagaattgctaccatgccagctccaccttggcaacag
cctactggtctgccattgcaaatgcaagcacctcaacattcttcagcacttgatagatta
ccacagcccgctgacagtgaaatgccagtcaagaggttggacattcgtggcacatacaat
ggtttgaatgtagatagatccttggcggagaagcataggtcatcacctgctcgtgctccg
acagaatggcttccccttcaccatacaccatcacaaactttaccactaattatacctgag
acaaaacatgttagaagtgcatcggatagtttagaaattagttcttttgttagccaagga
gctagttcatcagtatttgttccgcatcatcagtatgatgccttggaccggaaaacaggt
acccgtaacttagctcaaccaccatatcagcaccaagatttgttgctaccaagccaacaa
aatcaaggtacaattttgggaaaccaagttcatcctcatctgccccaacagttacatccc
cattcccatcctcaccatcaggagacttttagaagctttgcccctggcatgactgtatct
ccattccaaggacaaggaggcaatgcaaccatgacaccagtttccgttctgccaactttt
tctgtaccacctgctgtgccaccctatggcgtgctgtctgcacctgggtttcctatgcca
ccattaccgcccggaccaccacctgtcccactgcagatgggttcatcatcatcacaagtt
ggtggccctcaaccatttgtctctggacttttgagtaaccttatgcggcatggtgtaatt
tcactggaaccacctagccaatcccaggattctgttggagttgacttcaatgtagacctc
aaggtacggaatgagcctgtcatcaatgctttgtatcaggatctttcaaggcagtgtaaa
acttgtggccttcgatttaaatgccaagaggagcatcgtgctcacatggactggcatgtt
acaaaaaataggaattcaaagaaccgtaagcaatcttcacgtaaatattttgtcacggtg
gaggaatggttaagagctgcagaaacagtaggaaacgatggagttcctgcttttgtgccc
tcagacccagtcccagatagaaaggaagagagagaaattgctgttcctgcggatgaggag
caaacagcctgtgcattatgtcaagagccatttgaagatttctacagtgatgagactgat
gagtggatgtatagaggtgcggtctacatgaatgcaccagacggtaatattgatggtctg
gaaaggtcacggttgggacctattgtccatgctaaatgtcgatctgggcccagcaatact
tag
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integrated database retrieval system
