Zea mays (maize): 103653563
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Entry
103653563 CDS
T01088
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
zma
Zea mays (maize)
Pathway
zma03440
Homologous recombination
zma03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103653563
03450 Non-homologous end-joining
103653563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zma03032
]
103653563
03400 DNA repair and recombination proteins [BR:
zma03400
]
103653563
DNA replication proteins [BR:
zma03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
103653563
DNA repair and recombination proteins [BR:
zma03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
103653563
BRCA1-C complex
103653563
NHEJ (non-homologous end-joining)
MRX complex
103653563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
Rad50_zn_hook
AAA_29
ABC_tran
ABC_tran_CTD
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
103653563
NCBI-ProteinID:
XP_008678657
LinkDB
All DBs
Position
4:104253883..104336203
Genome browser
AA seq
1335 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPDNKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNSR
SGHTFVHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEFKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAVLENVIFVHQDESNWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQMQEIKTFRLKLENLQTVKDQAHKLRENIAQDQEKSDASKS
QMEQLKEKICGTEREILQMETSLDELRRLQGQIDIKATERSTLLTQQHEKLAALSEENED
TDEELMEWQTKFEERIALLETKISKLVRDMDDEASYSSVLSKQNSELTHEIGKLQAEADA
HLTMKHERDSDIKNICTKHNLGPVPEHPFTNDVAMNLTNRIKARLSSLENDLLDKKKSNE
DQLDVLWKHYLKINARYSEVDGQIQSKIESMSGILRRRKDKEKERDAAEVELSKFNLSRI
DERERHMQIEVERKTLALGERDYDSIISQKRTEVYSLEQKIKVLLREKDIINRNADERVK
LGLKKDALESSKDKLNEIVNEHKDKIKKVLRGRNPFEKDMKKEINQAFWPVDKEYNELRS
KSQEAEQELKFTHSKVTDAREQLTKLRRDMDAKRRFLDSKLQSILQISANVDMFPKVLQD
AMNKRDEQKRLENFANGMREMLAPFEHLARKNHVCPCCERAFTPDEEDEFVKKQRMQNSS
TAERSKALAMESSNAEALFQQLDKLRTIYDAYVKLVEETIPLAEKNLNQHLADESQKAQA
FDDLLGVLAHVQMDRDAVEALLQPTDTIDRHVHEIQQLVKEVEDLEYALDSSGRGVKSLE
EIQLELNFLQRTRDTLIVEVDDLRDQHRMLNEDMSSAQVRWHNAREEKVKASSILERFQK
SEEELVLLAEEKEQLIVEKKLLEESLDPLSKEKESLLQEYNALKQKLDEEYHQLAERKRE
FQQELDALGRLSMKIKGYLDSKKNEKLKELQGRHVLCHSQLQSCMAKQQRISAELNKSKE
LLQGQGQLKRNIDDNLKYRKTKADVEQLTRDIESLEERLLSIGSLSAIEADLKRHSQEKE
RLNSEFNRWQGTLSVYQSNISKHKQELKLSQYKDIEKRYTNQFLQLKTTEMANKDLDRYY
TALDKALMRFHSMKMEEINKIIKELWQQTYRGQDIDYISINSDSEGAGTRSYSYRVVMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALL
RIMEARKGQENFQLIVITHDERFAHLIGQRQLAEKYYRVSKDEKYLRVRWNTTACFCVVG
AVGFASTFVRLSLNV
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgttgacaagatgctgatcaaggggattcggagcttcgatccggacaataag
aacgtcatcaccttcttcaagccgctcaccctcatcgttggccccaacggtgctggcaag
accacgatcatcgagtgcctgaagctttcttgcaccggcgagctgccccccaactcccgc
tctggccacaccttcgtccacgaccccaaggtagctggcgagacggaaacaaaaggacaa
attaagttgcggtttaagactgcagcaggaaaggatgtggtgtgcatccggtccttccag
cttacccaaaaggcatcaaagatggagtttaaggcaattgaaagcgtcctccagactata
aatccacacacaggggagaaagtctgcctcagctacagatgtgctgacatggatagagag
attcctgccttaatgggtgtttcgaaggccgtactggagaatgttatatttgttcaccaa
gatgaatccaattggccattgcaggacccgtcaacacttaagaagaagttcgatgacatc
ttctctgccacacgctatacgaaagctcttgaagtcataaagaaacttcacaaggatcaa
atgcaagagatcaagacttttaggttaaagctggagaaccttcagactgtaaaagaccaa
gcacataagctgcgtgaaaatattgctcaagatcaagaaaagtcagatgcctcaaaatct
cagatggagcaactgaaggaaaagatctgtggtaccgagagagaaatcctgcaaatggaa
acaagtttggatgaactgagaagacttcagggacaaattgacatcaaggcaacagagaga
agtacattacttacgcagcagcatgaaaagcttgctgcactttctgaggaaaatgaagat
accgatgaggaactaatggaatggcaaacaaaatttgaagaaaggattgcgttactagaa
acaaaaatcagtaaacttgtaagagatatggatgatgaagcatcttatagctccgttctg
tccaaacaaaattctgaattaacacatgaaattggaaagctccaggcagaagctgatgct
cacctgactatgaagcatgaacgagactcagacataaaaaatatatgcactaaacataat
cttgggccggttcctgaacatccctttacgaatgatgttgctatgaaccttacaaacagg
attaaagcgagactatcaagtcttgagaatgatttgctggataagaagaaatccaatgaa
gatcagttagatgttttgtggaaacactatcttaaaataaatgctcgctactccgaagtt
gatggtcagatacaatctaagattgaatccatgtcaggcattttaagacggagaaaagat
aaagagaaagaacgcgatgctgcagaagtggagctttcaaaatttaatctatcccgtatc
gatgagagggagagacatatgcaaattgaagtcgagaggaagacacttgcgcttggagaa
agagactatgattcaattataagtcagaaacgaacagaagtatatagtttggaacagaaa
ataaaagtgcttctgcgggagaaagatataataaatagaaatgctgatgaaagagtaaaa
ctgggtttgaagaaggatgcattggaaagcagcaaggacaagctcaatgagatagttaat
gagcataaggataaaatcaaaaaggtacttagggggaggaatccttttgagaaggatatg
aagaaggagatcaatcaagccttttggcctgtggacaaggaatacaatgagttaagatca
aaatcccaggaagcagagcaagagcttaaatttactcacagcaaagtaactgatgctaga
gaacaattgacaaaacttcgaagagatatggatgcaaaaagaagattcctggactcgaaa
cttcaatctattttacagatatctgctaatgttgacatgtttcccaaagttctacaagac
gccatgaacaaaagagatgaacagaaaagattagagaatttcgcaaatggaatgcgggaa
atgcttgcaccttttgaacatttggctcggaagaatcatgtatgcccatgctgtgaacgt
gctttcacacctgatgaggaggatgagttcgtgaagaaacaaaggatgcaaaactcaagt
actgcagagagatctaaagctctggcaatggaatcatcaaatgctgaagctctttttcag
caattggataaacttcggactatctatgatgcttatgtgaagctggtagaagaaaccata
cctctagcagagaaaaacttgaatcaacatttggcggatgaaagtcagaaggcgcaggca
tttgatgatcttttgggtgttcttgcccatgttcaaatggacagggatgcagtggaagcc
ttattacaacccactgatactattgacaggcatgtacatgaaattcaacagctagtcaaa
gaagtagaagatcttgaatatgcacttgattctagtggccgaggtgtcaagtctttggag
gaaattcaactggagctgaactttctgcagagaacaagggacacattgattgtcgaagtg
gatgatcttagagatcaacatagaatgctaaatgaagatatgtcaagtgctcaggtgaga
tggcacaatgctcgggaagagaaagtgaaagcttctagcatattggaaagattccaaaaa
tctgaagaggaattggtgcttctagctgaggaaaaagaacaactgattgtagaaaagaag
cttttagaagagtctcttgatccattgtccaaagagaaagagagcttgttgcaagagtat
aatgctttgaagcaaaagctggatgaagagtatcatcagcttgcagaaagaaaaagggag
ttccagcaagaacttgatgctcttggaagacttagtatgaagataaaagggtacttggat
tccaagaaaaacgaaaagcttaaggaattgcagggaaggcatgttctttgccattctcag
ttacagagttgcatggcaaaacagcaaagaatatcagctgagttaaacaagagcaaagaa
ctactgcagggccagggccagttgaaaagaaacattgatgacaatctcaagtacaggaaa
acaaaggctgatgtggaacaacttactcgtgatatagaatcacttgaagaaaggctgctt
tcaataggtagcttgtctgctatagaagctgatctgaaacgccattctcaagaaaaagag
aggcttaattcagaatttaacaggtggcaaggaacactttctgtttatcaaagtaatatt
tcaaagcacaaacaagagcttaaactgtcacagtacaaggatatcgagaagcgatatact
aatcaatttctccagcttaagacaactgaaatggcaaacaaggacttggacagatattat
actgctttagacaaggctcttatgcggttccacagcatgaagatggaggagataaataaa
ataatcaaggaactgtggcaacagacatacagaggccaggatattgattacataagcata
aattctgattctgagggtgctggcactcgatcatacagctaccgcgttgttatgcaaact
ggtgatgctgagctggaaatgcgagggcgctgcagtgctggtcagaaggttcttgcttct
cttataatcagactagcacttgcggaaactttctgcctgaactgcggtatattggctttg
gatgagccaactacgaatctagatgggccaaatgcagagagtcttgctgctgcgctgttg
agaataatggaagccaggaaagggcaggagaacttccagttgattgtaatcactcatgat
gagagatttgcccatcttatcggtcaaaggcagcttgctgagaagtactatcgagtctcc
aaggatgagaagtacctacgagtacgatggaacacaacggcatgtttctgcgtcgttgga
gccgttggattcgcttcaacatttgtaaggttgtctcttaacgtatga
DBGET
integrated database retrieval system
