KEGG   Zea mays (maize): 103654914
Entry
103654914         CDS       T01088                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
zma  Zea mays (maize)
Pathway
zma03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:zma00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    103654914
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zma03021]
    103654914
Enzymes [BR:zma01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     103654914
Transcription machinery [BR:zma03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     103654914
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 103654914
NCBI-ProteinID: XP_008679943
UniProt: A0A1D6QSY4
LinkDB
Position
4:245967328..245979874
AA seq 1932 aa
MEEDHSVILISEGAIKSIKLSLSTGEEICTYSINECPVTHPSQLGNPFLGLPLEAGKCES
CGASENDKCEGHFGYIELPVPIYHPCHVTELRQLLSLICLKCLRIKKGKVKQSNGKGNAA
PTLCSYCRDIPALSLKEIKTTDGAIRLELRAPHNKHMTERSWNFLDKYGFHHGGCSHHRT
LLPEEALNILKKVPDDTRRKLAARGYIVQTGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI
SIALLKKVLQKIEQIKRSRSGSPNFESHDAESCDLQLAIGQYIRLRGTTRGPQDNTKRFT
VGSADSAALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGLGVVGLPSEVAKRMTFEE
QVTDININRLQDVVDKGLCLTYRDGQATYAITVGSKGYTTLKVGQTISRRIVDGDVVFLN
RPPSTHKHSLQAFYAYVHDDHTVKINPLMCGPFSADFDGDCVHIYYPQSLAAKAEALELF
SVERQLISSHSGKVNLQLGNDSLVAMKAMSHTTMLHKELANQLAMFVPFSLLAPAVIKPV
PSWTISQIVQGAFPANLTCQGDTHLVRDSTIIRLDLGKESVQDSFPDLVSSILREKGPKE
ALQFLNVLEPLLMEFLLLDGLSISLRDFNVPKALLEEAQKDIRNQSLILEQSRCSTSQFV
EFRVENNLKNVKQQISDSVGKFSDLGLLIDPKKEASMSKVVQQVGFVGLQLYREGKLYSR
RLVEDCFTNFVNKHLAIGDEYPPEAYGLVQSSYFHGLNPYEELIHAISTREAMIRSSRGL
SEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQLKYGEDDETDSSSVVPPGEPVGVLA
ATAISNPAYKAVLDSSQSNNASWESMKEILQTRTSYKNDVKDRKVVLFLNDCSCAKKFCK
ERAALAVQSCLKRVTLGDCATDICIEHQKQINLDGTSEAAPTLVGHIHLDKGHLERINIS
TQDILQKCQEVSGRFGKKKGHLCHIFKKITFATCDCSFTQMPIDGKLHKVPCVQFAFSDD
IVLSESIERAVNVIADSVCSVLLDTIIKGDPRIQAAKVIWVESDAASWVKHTRKVSKGES
ALEIIVEKDDAVSNGDAWRTAIDACLPVLNLIDTRRSIPYGIQQVRELIGISCAFDQVVQ
RLSTTVKMVNKGVLKDHLILVANSMTCTGNLIGFNIAGYKATFRSLKVQVPFTESTLFTP
MKCFEKAAEKCDSDSLGCVVSSSAWGKHAAVGTGSSFQILWNENQLKSNKEYGDGLYDFL
ALVRTDQEKTDYMFLDDVDYLVEENAADDMCLSPEPDGTLGKPTFEDNFEEQNIQKGSSW
EIGITTNSSWEQNASVANDSGDWGGWSSGGGAAAKPADQDNSWEVHAKVQDNSTTDWGGW
SVEKPTGEATVSGEPAETDTWADKGAKMESDAGDGNWEKSSTPEASKKNDSSENTWDKRK
GDGGDGAWGNRSDDGHGNWEHPSNWNGQSLDVDQDTWGNARGKKKADGNYCQWEEQPSNY
KQKKTNADHDSSYNNVMPSSEIAWNAGDGTGRPNAKSNAESSWGEEDKMESDDHPKVPKE
SDTWNTGRSNESPWDNTDALQDSWVKSAARNNNTQDGSWDKVVSMKDLDSLQDSWSKATI
QTNDAQNDSWDNVAKNAPDSAAEDSWGAATPAETTDSGNKEWKSDGWGAKSGNWSSQRNN
PGRPPRRPDERGPPPPRQRFELTVAEKNILLEVEPIKLRVRSIFREACDGVRLNPEDEKF
ILEKVLEHHPEKQSKVSGEIDYLTVNKHQTFQDTRCFFVVSTDGSQADFSYLKCLENFVR
KSYTEDADTFCMKYLRPRRRQAPPADVGTASGAPDEVPPSTAAETEQGTPPAPQAEVPQE
TWGSPAVPLEGGTHIAGPDSTGDAVILGEQHDLTPASPAVAPQVASEPDTTDGTGLLGKA
PQADWGPRFDAD
NT seq 5799 nt   +upstreamnt  +downstreamnt
atggaggaggatcactcggtgatactaatatctgaaggtgctattaaaagcatcaaactt
agcctctctaccggagaagagatatgcacatactccataaacgagtgcccagtgacccat
cctagccagcttggaaatccgttccttgggttgccacttgaagctgggaagtgtgaatcc
tgtggtgcctctgaaaatgacaaatgcgaaggccattttgggtacattgaactacctgta
cccatataccatccatgtcatgtcactgaactgaggcaactattgagcttgatatgtctg
aagtgccttcgaatcaagaaagggaaggtgaaacaaagtaatggaaaaggaaacgcggca
ccaactttgtgctcttattgcagggatattccagccctgtctttgaaggaaatcaagaca
acagatggtgcaattcgtttagagttgagagcacctcataataaacacatgacagaacgt
tcatggaactttcttgataaatatggatttcatcatggtggatgttctcaccataggaca
ctgcttccagaagaggctctaaatatattgaagaaggttcctgatgatactaggagaaag
ctagctgcacggggatacattgttcagactgggtatgtgatgaagtaccttccagtacct
ccgaactgtctatatattccagagttcaccgatgggcagagcattatgtcatatgacatt
tcaatagctctgttgaagaaggttcttcagaaaatagaacagattaaaagatcaagatct
ggttccccaaactttgaatcacatgatgctgaatcatgtgatttgcagcttgcgattggc
cagtacatacgtctaaggggcactacaaggggccctcaagacaacaccaagcggtttact
gttggcagtgctgattcagctgcattgtcaacaaaacagtggttagaaaagatgcggaca
ctgtttatcagcaaagggtcaggtttttcatctcgcagcgttctgacaggagatccatat
attgggctaggtgttgtagggcttccttctgaagttgcaaagagaatgacattcgaagag
caggtaactgacataaacattaacagattgcaagacgtggtagacaagggactctgtttg
acctacagagatggtcaagctacatatgccatcactgttggatcaaaagggtacacaaca
cttaaagttggtcagactatcagtcggaggatagttgatggggatgttgtgtttcttaac
aggccacccagcacacataagcattctctccaagctttctacgcatatgtgcatgatgac
catacagtcaaaatcaatcctctcatgtgtggccccttttctgctgactttgacggggat
tgcgtacacatatattatccacaatcgcttgctgcaaaagctgaagccttggagcttttt
agtgttgagaggcaactcattagttcgcacagtgggaaggttaatctccagctaggtaac
gactccttggtagctatgaaggctatgtctcatacaaccatgttacacaaggaattagca
aaccagttggcaatgtttgtgccattttcacttcttgctcctgctgtaatcaagccagtt
ccatcttggacaatatcacagatagtgcaaggtgcatttccagctaacctgacttgccaa
ggggacacacacttggttagggacagcacaatcataaggctggaccttggcaaagaatct
gttcaggactcattccctgatttggtgtcctccatccttcgtgagaagggtccaaaagaa
gctctgcaatttctgaatgtgttggagccattgttgatggagtttttacttcttgacggt
ttgagtataagtctgcgggattttaatgttcccaaggctttattggaggaagcacaaaag
gacattcgaaatcagtcccttattcttgagcagtctaggtgctctacaagtcaattcgta
gaattccgagtcgaaaacaatttgaaaaatgtcaaacagcagatttcagattctgttggg
aaattctctgaccttggtctgctgattgatccgaaaaaggaagcctcaatgtcaaaagta
gttcaacaagttggttttgttggcttgcaactgtatcgtgaaggcaagttgtattcaaga
cgcttggtagaggactgcttcacaaactttgttaataaacacttggccattggagatgag
tatcctccagaagcgtatggtcttgtccaaagttcatattttcatggtctcaatccttat
gaagagttgatacatgctatatccactagagaagctatgatccgctcctctagaggtctg
tcagaacctggaactttgttcaagaatttaatggccatcttgagggatgtagttatatgt
tatgatggaactgtgagaaacatttgtagcaattctatcattcaacttaagtatggggaa
gatgatgaaactgattcttcaagtgttgtacctcctggtgaacctgtgggtgtcttagcc
gccacagctatctcgaaccctgcatacaaggctgtcttggattcctcccaaagtaacaat
gcttcatgggagtcaatgaaggaaattcttcagacaagaacttcctataaaaatgatgtg
aaagatcggaaagtggtcctattcctgaatgattgctcttgcgcaaaaaaattctgcaag
gaaagggctgcacttgcagtacaaagttgtcttaagagagtcacacttggggattgtgct
actgatatctgcattgagcatcagaagcaaataaatttagatggaacatctgaagctgcc
ccaactcttgtaggacatattcaccttgacaaggggcatttagaaaggataaacattagt
actcaagacattctccaaaaatgtcaagaagtttctgggagatttggaaagaagaaagga
cacctttgccacatctttaaaaaaattacttttgctacttgtgattgttcattcactcag
atgccaatcgatggaaagctacataaggttccatgtgtgcagtttgctttttctgatgac
attgtactatccgagtctattgagagagcagtgaatgtgatagctgactctgtctgctca
gtgcttttagatacaattattaaaggtgatcctcgaattcaagcggcaaaagttatctgg
gttgaatcagatgcagcatcttgggtaaaacacacacggaaggtatcaaagggcgagtca
gcattagaaatcattgttgaaaaagatgatgctgtaagcaatggtgatgcctggagaaca
gcaattgatgcctgcttacctgtacttaacctcattgacacacggaggtctattccatat
ggcattcaacaagtgagggaacttattggcatctcatgtgccttcgatcaagtggtgcag
cggctttcaacgactgtaaaaatggttaataaaggagttcttaaagaccatttgatactt
gtggcaaacagcatgacatgcactggaaatttgattgggttcaacattgctggctacaag
gcaactttccgttcattaaaagttcaagtgcctttcaccgagtccactttgtttacccct
atgaaatgctttgagaaggctgcagaaaaatgtgattctgattcattgggatgtgtggtc
tcatcgtccgcatggggcaagcatgcagcagttggtactgggtcatcttttcaaattctc
tggaatgaaaatcagctgaaaagcaacaaggagtatggggatgggttgtacgatttctta
gcattggtcaggactgaccaagaaaagacagactacatgttcttggacgatgttgactat
cttgtagaggagaatgcagcagatgacatgtgcttatctcctgagccagatgggaccctt
ggtaagcctacctttgaggataattttgaagagcaaaatattcagaaaggcagctcatgg
gaaattggcataacaacgaactcaagttgggaacagaatgctagtgttgcgaatgattct
ggtgactggggaggctggagtagtggaggtggagctgctgcaaagccagcagatcaagat
aattcatgggaagtgcatgctaaggtgcaggacaattccaccactgattggggaggctgg
agcgttgagaagccaacaggtgaggcaactgtatctggagaaccagctgaaacagatact
tgggctgataagggtgctaaaatggaatcagatgcaggtgatggtaattgggaaaagtcc
agcactcctgaggcatcaaagaaaaatgactcatcagaaaatacatgggacaaaagaaaa
ggagatggaggtgatggtgcgtgggggaacaggtctgatgatggccatggcaattgggag
catcccagcaattggaatgggcagagtttggatgtagatcaggacacatggggaaacgcc
aggggaaaaaagaaggcagatggtaactactgtcaatgggaggagcagccaagcaattac
aaacagaagaagacaaatgctgatcatgattcctcctataacaatgtgatgccgtcatca
gaaattgcttggaatgctggagatggaactggaagaccaaatgccaagtctaatgcagaa
tccagttggggtgaggaagataagatggagtctgacgatcatccgaaagtcccaaaagaa
tcagacacatggaatacagggagatcaaatgaaagtccatgggataacactgatgcactg
caggattcctgggttaagagcgcagctcgcaataacaacactcaggatggttcatgggat
aaagtagtatctatgaaggatcttgattcactccaagattcatggagtaaggcgacaatc
cagacgaatgatgcacagaatgattcttgggacaatgtggcaaaaaatgccccggattct
gccgcagaagactcctggggggctgcaacaccagcggagacaactgattctggtaacaag
gagtggaaatcagatggatggggggcaaagtctggtaactggagcagccaaagaaataat
cctgggagacccccaaggagaccagatgagaggggtccacctccaccaagacaacggttc
gaactaacagttgcggagaagaacattcttctagaagttgaacctattaaattacgtgtg
agaagcatcttccgtgaagcatgtgacggtgttagacttaatccagaagacgagaagttt
atcctggagaaagttcttgagcaccacccggaaaagcaatccaaggtgtctggtgaaatc
gactacctaacggtcaacaagcaccagactttccaggacactcggtgctttttcgtggtc
tccacagatggatcccaggcagatttctcctacctgaagtgcctggagaactttgtgagg
aagagctacacggaggacgccgacacattctgcatgaagtacttaaggccccgtcgcagg
caggcaccaccagctgatgttgggacagcatcaggcgccccggatgaggttccaccgtca
accgcagctgagacagagcaaggcactcctccagcccctcaggcagaggttccacaagag
acttggggttctcccgcagtgcctctggaaggaggaactcacatcgccggaccagactca
acaggcgacgctgtgatcctaggggagcagcacgatctgactccggcttctccagctgtg
gcaccacaagtggcttctgagccagacacaaccgacggcacggggcttctaggaaaggct
ccgcaagctgactggggacccagattcgacgctgactga

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