Zea mays (maize): 118472932
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Entry
118472932 CDS
T01088
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
zma
Zea mays (maize)
Pathway
zma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118472932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
118472932
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118472932
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SRP_TPR_like
ARM_TT21_N
DUF6360
Motif
Other DBs
NCBI-GeneID:
118472932
NCBI-ProteinID:
XP_035816836
UniProt:
A0A804UDB6
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Position
7:70754761..70766771
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AA seq
825 aa
AA seq
DB search
MEPPAAKEAPSPPLQPAAEEDAMLSATAVMAKEASVAFQGRRYADCAEVLTRLLDMKEGD
PKVHHNMAITKAFLDGCPDSNRLLKILCDAKRRSEELACATREQADSANGVGNSAPSGSR
GSGVALPFSATHNVSTYGDEFDTTIITFNMAVILYHLHDYESALSVLDPLYRNIEPMDET
TALHVCFLLLDITLALQDATKAADIIQYMERAFGVANITSPNENPSIAQQQLAQPKPPVK
ISVPPDSELNAYAGGYENLSAGILPDDQIEFESLYSSFDGHQNLGRRIFNDFSRASADLA
ATAADLKVRLQIYKVRLLLLTRNLKVAKRELKVLMNMARGRDSSTELLLKSQLEYARGNY
RKAVKLLSTPHNRAEPAMLAIFYNNLGCILHRQRSYHTSIWCFSKALKYTLSLRSEKPMK
LSTLSQDKSCLISYNCGVQHLMCGKPLLAASCFREAMPLFYKRPLFWLRFSECSLLALEK
GLLCAKGASSCNDEIEVIVVGSGQWRQLIVNHVSLRSNLGCAGVTSGEHKKLVSLGFARQ
CLLNALLLLNATEQENWVTTSNAEDYIQGTLQGYKNSGQKNTTSTDSKTPSAPTLANVNG
EQKGTSLNATLQSSLAFYNEICRKENLKMRQAILGNLAFVELCLENPLKALSYAKSVMQV
KDCSRMYIFLSHVYAAEALCTLNRPTDAAEKLSVYIRDGNDIELPYNMENSEKALVEKDS
DSEDLAAATVTKVATEESEYSEGLRPEEARGVLYINLAMTAAVQGKVEQANYMVSRGLAM
LPNNPRAVLASVYIDLLQGKSQEAVVKLRHCRNVRFRPGSIAASS
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atggaacccccggcggcaaaggaggcgccgtcaccgccgctccagcctgcggcggaggag
gacgcgatgctctctgcgacggcggtcatggcgaaggaagcctctgtagcgttccaggga
cgtcgctacgccgactgcgcagaagtgctcacgaggctgctggacatgaaagagggcgat
cccaaggtccaccataacatggccatcaccaaagccttcttggatggttgtcctgattca
aacaggctgcttaaaattctttgtgatgctaagagaagaagtgaagagcttgcatgtgca
actagagaacaagctgattctgcaaatggggtaggaaatagtgctccttcaggatcaaga
gggagtggcgttgcactacctttttctgctacacataatgtgtcgacttatggggatgag
tttgacacgaccataattacattcaacatggctgtcatcctgtatcatcttcatgactat
gaatctgcactatctgttttggacccattgtaccgaaacattgaaccaatggatgagaca
actgctcttcatgtatgctttttattattggatatcacattagctttgcaagatgcaaca
aaggctgcggacataatacagtacatggaaagggcatttggagtagctaacataacgagc
ccgaatgaaaatccaagcatagctcagcagcaattagctcaaccgaagcctcctgtgaaa
attagcgtgcctccagattctgaattaaatgcttatgctggtggatatgagaacctttcg
gctggaattttaccagatgatcaaatagaatttgaatctctatactctagttttgatgga
catcagaatttgggcaggcgtatctttaatgatttctcaagggcatctgctgatcttgct
gctactgctgctgatttgaaagttagacttcagatttacaaggttcgccttctactgctc
actaggaaccttaaggttgcgaagcgagaactcaaagtactaatgaacatggcacgtggt
agggattcatctacagagcttctcttgaaatctcagctggagtatgcccgggggaattat
aggaaagctgtgaagctattgagcacaccacataatcgggctgaaccagcaatgctagcc
attttctacaacaacctgggctgtatactccaccgacagagatcgtatcacacctctata
tggtgctttagcaaagcgctgaaatacactttatcacttcgttcagagaaaccaatgaag
ctgtctacattatcacaagacaagtcttgccttatttcatacaactgtggtgtccaacat
ttgatgtgtgggaagcctttgttagcagcttcttgttttcgtgaagctatgccgctcttc
tacaagcgacctcttttctggcttcgtttttctgagtgtagtctgctagctctagaaaag
ggtctcctgtgtgcaaaaggtgcttcttcatgcaacgatgagattgaagtcattgttgtg
gggtcaggacaatggaggcagttgattgtcaaccatgtgagcttgagaagtaatttaggt
tgtgcaggtgtgacttcaggtgaacataaaaagttggtttcacttggatttgctagacag
tgtctactcaatgcgctgctactattgaatgctactgaacaggaaaattgggtaaccaca
tctaatgcagaggattacatccaaggaacattacaaggatataaaaactcaggtcagaag
aacactacaagtacggattctaaaacaccttctgccccaactctagctaatgtaaatggt
gaacaaaagggaacgagcttgaatgctaccttgcagagttctcttgctttctataatgag
atctgtcgaaaagagaacctgaaaatgagacaggccatcctggggaacttggcgtttgtt
gaattgtgtcttgagaaccccttgaaagctttgtcttatgcaaagtcagtaatgcaggtt
aaagactgttccaggatgtatatattcctcagccatgtatacgcagctgaagctttgtgt
actttgaacagaccaacggatgctgctgagaagctatcagtttatataagagatggcaat
gatatcgagttgccgtataatatggagaactctgaaaaggccttggttgagaaagacagt
gacagtgaagacttggctgctgctacagtgacaaaagtagccacagaagaatctgagtac
tcagagggcctcaggcctgaggaggcccgtggtgtcttgtatatcaaccttgccatgact
gctgcagtgcagggaaaagttgagcaagccaactacatggtcagccgtggcctggcgatg
ttgcccaacaaccctcgagcagtgctagcatcggtttacatagacctcttgcaagggaag
tcccaggaggctgtcgtgaagttgagacactgtaggaatgtgagatttagacccggtagc
atagcagccagcagctga
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