Zea mays (maize): 541972
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Entry
541972 CDS
T01088
Name
(RefSeq) histone deacetylase
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
zma
Zea mays (maize)
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zma01009
]
541972
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zma03019
]
541972
04131 Membrane trafficking [BR:
zma04131
]
541972
03036 Chromosome and associated proteins [BR:
zma03036
]
541972
Enzymes [BR:
zma01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
541972
Protein phosphatases and associated proteins [BR:
zma01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
541972
Messenger RNA biogenesis [BR:
zma03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
541972
Membrane trafficking [BR:
zma04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
541972
Chromosome and associated proteins [BR:
zma03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
541972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
PheRS_DBD2
Motif
Other DBs
NCBI-GeneID:
541972
NCBI-ProteinID:
NP_001105095
UniProt:
Q8LK09
LinkDB
All DBs
Position
7:complement(7557924..7570185)
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AA seq
618 aa
AA seq
DB search
MRPPSSGKKTEVSHSVGKCGVSDQACHGKCQSCGIDAKPFCAGVNEVSLLTGSHTDVEAS
KENRGACSLNNDRADALEEEANVSTARIGHVESADPGGSVGVEKEIFMAVNEESEGEQAG
ATLEDLFFFNGEEDDDSDWEPASRLVVNRWFCLNCTMPNVDKITYCMNCRELPGSVVDGY
DVFKKQIAQTALLSADTGLLPVSTAIGFDERMLLHSELEVKPNPHPERPDRLRAIAASLA
AAGIFPSKCALVPPREITKEELLMVHSPDHIESVEQTKNMLYSYFTSDTYANGHSACAAK
LAAGLCADLASLIVSGRVRNGFALVRPPGHHAGVKQAMGFCLHNNAAVAALAAKRAGAKK
VLIVDWDVHHGNGTQEIFDGDKTVLYISLHRHEDGNFYPGTGAAHEVGVLDGQGFSVNIP
WSRGGVGDDDYIFAFQTVVLPIASEFAADITIISAGFDAARGDPLGCCDVTPTGYSWMTS
LLAGSSNGRLLVILEGGYNLRSISSSATEVVKVLLGEGPNRASFVVSPSKEALSTVSQVL
KIQQQFWPVLGPTYASLQAQQGSVSSNHSNELKKRKRPGGGPGPFWWKMGSKRLLYEALI
EPRSRPRKLKGSTGSAAP
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgagacctcctagcagtggcaaaaagactgaggtctcccatagcgtggggaaatgtggg
gtttctgatcaagcttgtcatggcaaatgccaaagctgtggcattgatgcaaaacctttt
tgtgctggagtgaacgaagtctccttgttgactggcagtcacactgatgtggaggcctca
aaagagaaccgtggagcatgcagtttgaacaatgatcgtgctgatgctctagaagaagag
gccaatgtttccacagctaggataggtcatgttgagagtgctgaccctggtggctctgtg
ggtgtagaaaaggaaattttcatggctgttaatgaggagtctgagggggagcaagctggg
gcaacactggaggatctgtttttctttaatggtgaagaggatgatgacagtgattgggaa
cctgctagtcgccttgttgtgaatagatggttttgcttgaactgcacaatgccaaatgtg
gacaagattacatattgcatgaattgccgtgagcttccaggatctgttgtagatggatat
gatgtcttcaaaaagcaaattgcacaaacagctttgttatctgctgacacagggttgctg
ccagtgtctacggcgattggttttgatgaaagaatgctgctccacagtgagctagaagtt
aaaccaaatccacatccagaaagaccggatcgccttcgcgccattgctgcaagtcttgct
gctgcagggatctttccctcaaaatgtgctttggtacctcctcgagaaatcacgaaggag
gaacttcttatggttcatagtccagaccacattgaaagtgtcgagcagacaaagaacatg
ctttacagttacttcacttcggatacttacgcaaatggacattcagcatgtgctgccaaa
cttgcagctggattatgtgctgatcttgctagtttgatagtatctgggcgtgttcgcaat
ggctttgcgctggtaagacctcctgggcatcatgcaggggtgaagcaagcaatggggttt
tgtcttcacaacaatgcagcagtagctgcgttagctgcaaaaagagcaggtgccaagaaa
gtcctcatagttgactgggatgtgcaccatggaaatggcacacaagagatattcgacggg
gacaaaacagtcttgtacatatcattacatcgtcatgaggatggaaacttttaccctgga
actggagctgctcatgaggtgggagttcttgatggtcaaggattctcagttaatatacct
tggagccgtggtggtgttggagatgatgactacatctttgcttttcagactgtggtgctt
ccaatagcttcagagtttgccgcagacatcactataatatctgcaggattcgatgcagct
agaggtgaccctctgggttgttgtgacgtcactccaactggatactcttggatgacatcc
ctgctagctggttcctcaaatggaagattgttggtgatacttgagggaggatacaatctc
cggtcgatatcctcatcagctactgaagttgttaaggtcctacttggggagggtcccaat
cgtgcttcatttgtagtttcaccatcaaaagaggccttgagtactgtttctcaagtcctg
aagattcaacaacagttttggccagttttaggtccaacatacgcatcactacaggcgcag
caggggtcggtttcttccaatcatagtaatgagctgaagaaaaggaagcgtccaggagga
ggaccagggcccttctggtggaagatgggaagcaaaaggcttctatacgaagcgcttatt
gagcctcgcagccgtccgaggaaactcaaggggtcaactggttcagcagcgccttag
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