Zea mays (maize): 542081
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Entry
542081 CDS
T01088
Name
(RefSeq) sigma factor protein isoform 1
KO
K03093
RNA polymerase sigma-I factor
Organism
zma
Zea mays (maize)
Brite
KEGG Orthology (KO) [BR:
zma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zma03021
]
542081
Transcription machinery [BR:
zma03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
542081
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Motif
Other DBs
NCBI-GeneID:
542081
NCBI-ProteinID:
NP_001105185
UniProt:
A0A804Q5P0
Q8RWR8
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Position
6:complement(179354154..179357940)
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AA seq
568 aa
AA seq
DB search
MGLQMIHGRPCALCCPSSSSSSSALWMRMQAQLPPKQSHHPLNGGRAISSESLAALAWHF
LLRRRSRDGATALASSSGVLQIAEDKSSAANLTKHKVSAERKLLNDALDRTGVRYETESW
MDEETSSWMDRDLTDSDLRYRLLMQNLEELETSLVGKDLEMDILEQLGALGSFNASVARG
VSALHGRPDGSLLDDPEPETTPLDAGQEDSQVVVVRSGKSQERKLRRMRASSDEKGSRTS
VKVNPPRRPKKSRKASSSQFISEWKSHPGQRRIIVREQSALLSTIKECAGLEKIREKMVK
EGQEVSYHRWAEAAGVDEAELVSRLQAGYCCRDRLLVTTEWLVRCIARTYTGMGTALDDL
LQAGKMGVLDGAEKFDSRKGCRFSTYVKYWIRKGMLALLAENSGVTLLPARMESIMRKVK
EARRGIRYRQGRNPSDSEVAAAVGVSVANVRLARKCSRRAVSLYSEVAIGQDVKFAEVIP
DESASPDEAALFRGQLRERLLLVLGRLPAREGRVLRLRHGLEDGRCRSLEEIGGIYGVSK
EWIRKIEKSAMARLRDDDAVRRDLHDFV
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgcagatgatccatggcaggccctgcgccttgtgctgcccgtcctcctcctcc
tcgtcctccgccttgtggatgaggatgcaggcccagctgcccccaaagcagtctcaccat
ccattgaacggaggaagggcaatctcctctgaatccctcgcggcactggcatggcatttc
ctgctaaggcgtcgcagcagggacggtgccacagctctcgcatcttcatccggggtgctt
caaatcgcagaggacaaatcatctgcggccaacttgacaaagcacaaggtgagtgcagaa
aggaagctcctcaacgacgctcttgacagaactggtgtgcgatatgagactgagagctgg
atggatgaagagacatcgtcctggatggacagggatctcacggacagcgatttgcggtac
cgcttgctaatgcagaacctcgaggaactggagaccagcttggttggtaaagacctggag
atggacatccttgagcagcttggggctctgggatcgttcaacgcttctgtggccaggggt
gtctcggcgttacatggtcgaccagatggctctctgcttgatgatccggagccggagacg
actcctctggatgcggggcaagaagacagccaagtggtcgtcgtccggagtggcaagagc
caggagaggaagctgagaaggatgagagcatcatcagatgagaaaggatccaggacctcg
gtgaaggtgaacccaccacgaagacccaagaaatcccgtaaggcgagtagcagccagttt
atatccgagtggaaaagtcacccaggccaaaggaggatcattgtgcgtgagcaatcagca
ctgctgtccaccatcaaggaatgtgcaggtcttgagaagataagggagaagatggtgaag
gaagggcaggaggtgagctaccacaggtgggcggaggcagctggggtggacgaggcagag
ctggtgagcaggctgcaggcaggttactgctgccgggacaggctactggtgaccaccgag
tggctggtcaggtgcatcgcgagaacatacaccggcatggggacggccttggacgatctg
cttcaggctgggaagatgggcgttcttgacggcgccgagaagttcgacagccggaagggg
tgcaggttctccacgtacgtcaagtactggatcaggaaagggatgctcgctctgctggct
gaaaactcaggagtcaccctgctgcctgcaagaatggagagcatcatgcgcaaggtgaag
gaggcgcggcgtgggatccggtacaggcagggcaggaacccgtcggactcagaggttgcc
gccgccgtgggcgtgtcggtagccaacgtgaggctggcgcgcaagtgctctcgcagggcc
gtctcgctctactcggaggtcgcgatcggacaggacgtcaagttcgcggaggtgatcccg
gacgagtcggcgtctccggacgaggcggcgctgttccggggccagctgagggagcggctg
ctgctggtgctgggcaggctgcccgcgcgggaaggacgcgtgctgcggctgcggcacggg
ctggaggacgggcggtgcaggtcgctggaggagatcggcggcatctacggcgtctccaag
gagtggatcaggaagatcgagaagtcggccatggccaggctccgggacgacgacgccgtg
cgccgcgacctccacgacttcgtctag
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