Zymomonas mobilis subsp. mobilis CP4 = NRRL B-14023: A265_00559
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Entry
A265_00559 CDS
T03385
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
zmc
Zymomonas mobilis subsp. mobilis CP4 = NRRL B-14023
Pathway
zmc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
zmc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A265_00559 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zmc03021
]
A265_00559 (rpoC)
03400 DNA repair and recombination proteins [BR:
zmc03400
]
A265_00559 (rpoC)
Enzymes [BR:
zmc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A265_00559 (rpoC)
Transcription machinery [BR:
zmc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A265_00559 (rpoC)
DNA repair and recombination proteins [BR:
zmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A265_00559 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AHJ72039
LinkDB
All DBs
Position
complement(640376..644551)
Genome browser
AA seq
1391 aa
AA seq
DB search
MNELANFANPLASTEHFDHIQISLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVIEPGLTPLKKFQLLTEDELLEAQDQYGEDSFSAG
IGAEAVKKLLEALDLETEREDLLEELKHTKSELKPKKIIKRLKVVESFIESGNRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMDLRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGGNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVITTGP
ELKLHQCGLPKKMALELFKPFIYSRLDAKGLSMTLKQAKKWVEKERKEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMLKENEPGEGMRLSNMTEVHQALNV
GAVTLHSKIISRVPQVNEQGETYMKRVETTPGRMLLGETLPQNYKVPFETINRLLTKKDI
ADVIDTVYRHTGQKDTVLFADAIMSLGFKYACKAGISFGKDDMIVPAAKEALVEETRALV
QDFEQQYQDGLITQQEKYNKVIDAWSRCGDRVAGEMMKEIQMVHKGPDGRELPVNAIYMM
AHSGARGSAAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVVVEDDCGTERALEMKAITQGGNVIASLGERILGRTLA
EDIMGTDGQVAIPIGTLLDEAHIAVIEKIGIQSVKIRSPLVCESHGGVCAACYGRDLARG
TPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSHLEAVTDGRLQFRDLRTII
DPQGKQIALSRTGEVVLVGTDGRELASSRILLGAHLLHNDGDMVKKGDRLAEWDPFTIPV
ITESAGIVKYQDLVENQTLTEQVDEATGISQRVVIEYRAPRGKEDLRPRLTLMNGDSGET
ARYMLSPGTVISVDDGQEVLAGTVLARVSRESAKTRDITGGLPRVAELFEARKPKENAII
AKVSGRVEFGKDYKAKRKVIIRPDDGSEPIEYLVPKSKVIDAQEGDHVKRGDNLISGSPD
PHDILEVLGVEALAEYLVSEIQEVYRLQGVKINDKHIETIVRQMLLKVEITHAGDSIFLP
GEQVEKEDFEAVNAKLESQGQEPAQATPILLGITKASLQTRSFISAASFQETTRVLTEAA
VQGKIDTLSGLKENVIVGRLIPAGTGAAMKRLRVTANSRDAALRAANKAVNFEQPTIAIE
SDNTDTPDAAE
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaattagctaattttgccaatccgcttgccagtacagagcatttcgatcatatc
cagatcagtctggcctctcccgagcggatccgttcatggtcttttggcgagattaagaaa
cctgaaacgatcaattaccgcacctttaaaccggaacgggatggtcttttctgcgctcgt
atttttgggcctatcaaagattacgaatgcttgtgcggtaagtacaagcggatgaaatat
aaaggcattgtctgcgaaaaatgcggcgttgaagtcaccgtttccaaggtgcgccgtgag
cggatgggccacatcgaattggcagcgcctgttgcccatatttggtttttgaaatcactg
ccaagccgcatcggtcttctgcttgatatgcagttgaagcagcttgaacgcgtgctgtat
ttcgaaagctatattgttattgagccgggtctgacgcctttaaagaaattccagcttctg
accgaagatgaattgcttgaagcgcaagatcaatatggcgaagattccttctcggctggt
attggtgctgaggcggttaaaaagcttttggaagccttggatcttgaaacagaacgcgaa
gatctgcttgaagaactgaagcataccaaatccgaattaaagccgaaaaagatcattaaa
cgactgaaggtcgttgagagctttatcgaatccggcaaccgtcctgaatggatgattttg
gaagttattccggttattccgcctgaattacgtcctttggtgccgttggatgggggtcgt
tttgctacttccgatttgaacgatctttatcgtcgcgttatcaaccgtaacaaccgtctg
aaacgtctgatggatttgcgggcacctgatatcatcgtccgcaacgaaaagcggatgttg
caggaagccgtagatgctctgttcgataacggccgccgtggtcgcacgattaccggtggt
aacaagcgtcctttgaaatctctttctgatatgctgaaagggaagcagggtcgtttccgt
cagaaccttttgggtaagcgcgtcgattattccggtcgttccgttattacgacgggccca
gaactgaaactgcatcagtgcggtttgccgaagaagatggcgcttgagctgttcaagccg
tttatctattcgcgtctggatgcgaagggtctgtcaatgaccctgaaacaggcgaagaaa
tgggtcgaaaaagagcggaaagaagtttgggatatccttgaagaggtcatccgcgaacat
ccggtgatgttgaaccgcgctccgaccttgcatcgtctgggtattcaggcctttgaaccg
gttttgatcgaaggtaaggctatccagcttcatcctttggtttgctcggcctttaatgct
gactttgatggtgaccagatggccgttcacgtgccattgtcccttgaagcgcagcttgaa
gcccgcgttctgatgatgtccaccaacaatattctgtctccggcaaacggtaagccgatt
atcgtgccgtcgcaggatatggttctcggtatttattatctttcaatgttgaaagaaaat
gaaccgggtgaggggatgcgcctttccaatatgacggaagtgcatcaggccttgaatgtg
ggtgcggttaccttgcacagcaagattatcagccgtgtcccgcaggtcaatgagcagggc
gagacctatatgaaacgggtcgaaaccacgccgggtcggatgctgttgggtgaaaccctg
ccgcagaattacaaggttccttttgaaaccatcaaccgcctgttgacgaaaaaagatatc
gctgacgttatcgataccgtttatcgtcacaccggtcagaaagacacggttctttttgct
gatgcgatcatgtccttgggctttaaatacgcctgtaaggccggtatctcctttggtaag
gatgatatgatcgttccggctgcgaaagaagccttggtcgaagaaacccgcgcccttgtt
caggatttcgagcagcaatatcaggatggtctgattacgcagcaggaaaaatacaacaag
gtcatcgatgcttggtctcgttgtggtgatcgcgtggccggcgaaatgatgaaagaaatc
cagatggttcataaaggaccggatggacgcgaattgccggttaacgccatttacatgatg
gcgcattcgggtgctcgtggttctgccgcccagattaaacagctggctggtatgcgtggt
ttgatggcaaaaccgtcaggtgaaatcattgaaaccccgatcatttcgaactttaaggaa
ggtttgaccgtccttgaatactttaactcgacccatggtgcccgtaagggtctggctgat
acggctctgaaaaccgcgaactctggttatctgacccgtcgtttggttgacgtcagtcag
gattgcgtcgttgttgaagatgattgcggcaccgagcgcgcccttgaaatgaaagcgatt
acgcaagggggtaatgttatcgcctccttgggtgaacgtattttgggtcggactttggcc
gaagatatcatgggaaccgatggtcaggtcgccattccgatcggcaccctgttggatgaa
gcccatatcgcggttatcgaaaaaatcggtatccagtctgtgaaaattcgcagcccattg
gtctgtgaatcacatggtggtgtttgtgccgcttgttatggtcgtgaccttgcccgtggt
acgccggtgaatatcggtgaagcggtcggtgttatcgccgcccagtctatcggtgaaccg
ggaacccagttgacgatgcgtaccttccatatcggtggtgctgctcagttgaatgaacag
tcccatttggaagccgttaccgacggtcgtttgcagttccgtgatcttcgcacgatcatt
gatccgcagggtaagcaaattgctttgagccggacgggtgaagttgtgttggtcggcact
gatggacgcgagctggcttccagccgtattctcttgggtgctcatctccttcataacgat
ggtgatatggtcaagaagggcgaccgtttggctgaatgggatccgttcaccattccggtt
atcacggaaagcgccggtatcgttaaatatcaggatttggttgaaaaccagaccttgacc
gaacaggttgacgaagccaccggtatttcccagcgtgtcgttatcgaatatcgcgccccg
cgtggtaaggaagatttacgtccgcgtttgaccttgatgaatggcgattctggcgagact
gcccgttacatgttgtcaccgggaacggttatttccgttgacgatggtcaggaagttctg
gccggtacggttcttgcccgtgtcagccgtgaatcggccaagacccgtgatattaccggt
ggtcttccgcgtgtggctgaattgtttgaagcccgtaagccgaaagaaaatgcgatcatt
gcgaaagtatccggtcgcgttgaattcggtaaggattacaaggccaagcggaaagttatc
attcgtccggatgatggttcggaaccgattgaatatctggtcccgaaatccaaggttatt
gatgcgcaggaaggcgatcacgttaaacggggtgataacctgattagcggtagccctgat
ccgcatgatattcttgaggtcttgggtgttgaagccttggctgaatatctggtttcggaa
attcaggaagtgtatcgtctgcagggtgtgaaaatcaacgataagcatatcgaaacgatt
gttcgtcagatgttgctgaaagttgaaattacccatgcgggtgacagcatcttcttgccg
ggtgaacaggtcgaaaaagaagactttgaagcggtcaatgctaaattggaaagccaaggt
caggaaccagcacaggcaacgccgatcttgctgggtattaccaaggcatccttgcagacc
cgcagcttcatttctgccgcatctttccaagaaacaacgcgtgttctgacggaagccgct
gttcagggtaaaattgataccttaagcggtctgaaagaaaacgtcattgtgggtcgtttg
atcccagccggaacgggtgctgccatgaagcgtcttcgtgtgacagctaacagccgtgat
gctgctttacgggctgcgaataaggcggttaattttgaacagccgactatcgctatcgaa
agcgacaacacggatacaccggatgcagctgaataa
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integrated database retrieval system
