Zymomonas mobilis subsp. mobilis CP4 = NRRL B-14023: A265_01711
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Entry
A265_01711 CDS
T03385
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
zmc
Zymomonas mobilis subsp. mobilis CP4 = NRRL B-14023
Pathway
zmc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zmc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A265_01711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zmc03019
]
A265_01711
Enzymes [BR:
zmc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A265_01711
Messenger RNA biogenesis [BR:
zmc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A265_01711
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
HEAT_DAAF5
AAA_22
AAA_19
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AHJ73149
LinkDB
All DBs
Position
complement(1956868..1958244)
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AA seq
458 aa
AA seq
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MTETSVSFKTLGLDSSLVQALDGLGYSKPTPIQAQAIPHLLEGKDLCGIAQTGTGKTAAF
ALPSIHYLATNPQARPQRGCRMLILSPTRELASQIARACNDYTRHLRMSVNAVFGGVPIG
RQMRMLDRGTDILVATPGRLLDLIDQRALVLKDVEVFVLDEADQMLDLGFIHALRRIDKL
LPKNRQTLFFSATMPKTIQELSSQFLSDPVTVSVAPQSSTAERVEQFGIFVNQSEKQALL
TITLKNTPGLDRALVFTRTKHGADRVVRHLEAAGLPAAAIHGNKSQPQRERALNAFRNGR
LKILVATDIAARGIDVPGVSHVFNYELPNVAEQYVHRIGRTARAGRDGQAISFIANDERS
YLRSIERLTRVKLQILPLPENFVMEKELLPHPAPMRPERDGRDGRGGRGGGRGRFGGGAK
PGFNHSHGKGDDRGDRGGERPRRPRRPQMRGVRAVARS
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgacggaaacatctgtttcgttcaaaacccttggtctcgactcgtcacttgtgcaggct
ctggatggtcttggttatagtaagccgaccccgattcaggcacaagctatcccccattta
ttagaaggcaaggatctttgcggtatcgcccagaccggcaccggtaaaaccgcagccttt
gctctgccttctattcattatctcgcaaccaacccgcaggcacggcctcagcgtggttgc
cgtatgctgattttatcaccgacgcgcgaactggccagccagattgcccgcgcttgcaat
gactatacccgtcatctgcgtatgtcggttaacgccgtatttggtggcgttcctattggt
cgtcagatgagaatgctggatcgtggcaccgatattttggttgcaacgcccggtcgcttg
ctggatttgatcgaccagcgtgcgcttgtcttaaaagacgtcgaagttttcgtcttggac
gaagccgaccagatgctggatcttggttttatccatgcgttgcgtcgcattgataaattg
ctgccgaagaaccgccagactttgttcttctcggctacgatgccaaaaacgattcaggaa
ttgagcagtcagttcttgtctgatccggtaaccgtttcggttgcgccccagtcttcaacg
gctgaacgggttgagcaattcggtattttcgttaaccagtctgaaaaacaggctttgttg
acgattacgctgaaaaatacccctggccttgatcgggctttggtctttacccgcacgaag
catggtgccgatagagtggttcgccatttggaagccgctggtctgcctgctgccgccatt
catggtaacaaaagccagccgcagcgtgaacgcgctttgaatgcgttccgtaatggccgg
ttaaaaattctggtcgccaccgatattgctgcccgtggtattgacgttccgggtgtcagc
catgtcttcaattacgaattgccgaatgtcgccgaacaatatgtccatcgtattggtcgc
actgcccgcgctggtcgtgatggtcaggctatcagctttattgccaatgacgaacgctct
tatttgcgctctatcgaacgtttgactcgtgtcaaattgcagattttgccgctgcctgaa
aactttgtcatggaaaaagaattgctgccgcatccggctccgatgcgtccagaacgggat
ggcagagatggtcgcggtggtcgtggcggtggtcgcggtcgctttggtggcggtgcaaaa
ccgggtttcaaccactctcatggtaaaggtgatgatcgtggtgatcgcggtggtgaacgt
ccgcgtcgtccgcgtcgtccgcagatgcgtggtgttcgtgccgttgctcgtagctaa
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