Zymomonas mobilis subsp. mobilis CP4 = NRRL B-14023: ZCP4_0105
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Entry
ZCP4_0105 CDS
T02932
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
zmi
Zymomonas mobilis subsp. mobilis CP4 = NRRL B-14023
Pathway
zmi03410
Base excision repair
zmi03430
Mismatch repair
zmi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
zmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ZCP4_0105
03430 Mismatch repair
ZCP4_0105
03440 Homologous recombination
ZCP4_0105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zmi03400
]
ZCP4_0105
DNA repair and recombination proteins [BR:
zmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
ZCP4_0105
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
ZCP4_0105
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ZCP4_0105
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Peripla_BP_6
CbiJ
ATPgrasp_N
Nitro_FeMo-Co
Motif
Other DBs
NCBI-ProteinID:
AHB09442
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Position
complement(121932..123692)
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AA seq
586 aa
AA seq
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MANLVCGVSSSALGQAWQWRGQNSGFSGENPLEDLIDRILITRGCPRESLSAYRDPKIKN
FMPDPSLLCDMDRAAERLAKAIYKKESIVIFGDYDVDGATSSALMIDLLRQLGVNAGYYI
PDRVAEGYGPAVQSMRKLAEEGANLVVTVDCGAQAYEALEAAKEAGLDVVVVDHHQCQPQ
LPEAHAVVNPNRLDEEEGAQYGHLAAVGVAFLLAAALVRHLRQDGYFSDRPEPKLMALLD
LVALGTVADVAALHGLNRAFVAQGLKVMAARHRPGIAALLDVAGVSRPPTTYDLGFILGP
RINAGGRVGKSDLGVRLLTSLDKNECENLALALNQFNLERRSIEQTVTEAAEGLCEEQVE
RPVMVVAGEGWHPGVIGIVAGRLKQKYDRPIIVIGIDEEGNGKGSGRSLSGVDLGAAVLS
AKQAGLLVNGGGHAMAAGLSIKKDQIEDFSTFISERVQKDVETARANKALLIDEVLSAGG
VNLSLIEALEAGGPYGAGWPSPHIVAGPVYAIQTRILKEKHLSVIFKGQDGQSFKAIAFN
AVKTSITQMVVAAGRDRKLWVAGKIQLNEWNGRKDAQLHIEDIAWA
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatcttgtctgtggcgtttcttcttctgctctgggtcaggcatggcaatggcgc
ggccaaaattcggggtttagtggagaaaatccgcttgaagacctgattgatcgtattctt
atcacgcgcggctgtcctcgtgaaagtctgtctgcctatcgcgatcccaaaattaaaaat
tttatgcctgacccttctttattatgcgatatggatcgcgcggcagagaggctggcaaag
gctatctataagaaagagtctatcgtcatttttggcgattatgatgtcgatggagccact
tcatcggctttgatgattgatcttctgcgtcaattgggtgtgaatgccggttactatatt
cctgaccgtgtggcggaaggctatggcccagcggttcaatcgatgcgaaaattggccgaa
gaaggggctaatctggttgtgacggtcgattgcggcgcacaggcttatgaagcccttgag
gcagcaaaagaagccggtctggatgtggtggttgtcgatcatcaccaatgtcagcctcaa
ttgccagaggctcatgctgttgtgaatcctaaccgtcttgatgaagaagaaggcgcacaa
tatgggcatttggcagctgtcggcgtagcttttttattagcggcagctttggtacggcat
ttgcggcaggacggctatttttcggatagacccgaacccaaactgatggcgttacttgat
ttagttgccttgggaacagtcgctgatgtcgcggcgttacatggcctcaacagagctttt
gtcgcgcagggcttaaaagttatggcggcgcggcatcgtcccggcattgctgctctattg
gatgttgcaggcgtttctcgtccgccgacgacatatgatcttggttttatattgggcccg
aggatcaatgccggtggacgggtcggtaaatctgatttgggtgtcaggttgttgaccagt
cttgataagaatgaatgtgagaatctggcgctcgctttaaatcaattcaatctggaacga
cgatcgattgaacaaaccgtaaccgaagccgctgaaggcctatgtgaagagcaagttgaa
cggccggtgatggttgtggcgggcgaaggatggcatcccggtgtgatcggcattgttgcg
ggtaggctaaagcaaaaatatgaccgccctattatcgtgattggtattgacgaggagggc
aatgggaaaggttctggacgttctttatcgggcgtcgatttgggcgccgcagtcttatca
gccaagcaagcggggctgttggtgaatggtggtggacatgccatggcagcaggtcttagc
atcaagaaagatcagatagaggatttttcgacttttatttccgagagagtccaaaaagat
gtcgaaacggctcgcgcgaataaagccttgttgattgatgaagttttaagcgctgggggt
gtcaatttgtctttgattgaggctttggaggccggtggcccttatggagcggggtggccc
tcccctcatatcgtggcggggcctgtatatgccattcagacacggatattaaaagagaag
catttgtcggttatttttaaaggacaagatgggcaaagctttaaagcgattgcctttaat
gcggtaaagacctcaattacccaaatggtggtagcggcggggcgtgatcgcaagctatgg
gtggccggaaaaatccagttaaatgaatggaatgggagaaaggatgctcagcttcatatt
gaggatatcgcttgggcataa
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