Zymomonas mobilis subsp. mobilis CP4 = NRRL B-14023: ZCP4_0228
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Entry
ZCP4_0228 CDS
T02932
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, subunit A
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
zmi
Zymomonas mobilis subsp. mobilis CP4 = NRRL B-14023
Brite
KEGG Orthology (KO) [BR:
zmi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zmi03400
]
ZCP4_0228
Enzymes [BR:
zmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ZCP4_0228
DNA repair and recombination proteins [BR:
zmi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
ZCP4_0228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
NPHP3_N
DEAD
DUF2800
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AHB09558
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All DBs
Position
262213..265701
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AA seq
1162 aa
AA seq
DB search
MAHPQRLMPLEAEQLQASDPKGNIWLSASAGTGKTHVLTARVLRLLLNRAAPESILCLTF
TKAGAAEMSERINQRLAKWVIQLNDDELREELQALGARYDRDTLALARTLFARVLDAPGG
LRIQTIHSFCQSLLTAFPVEAGLIPGFRLIEGREEATEAKKTLTRILDHQTPPYHIKDDD
IALLAEKLGEQGAEDYIYQCRFHAFAFNNLGVAIESRVKRALDLPFSDINQALEEACDDD
HFDFALLRQIAEANEKWDTATAHKNLAIIQDFVAASPADRLASLGDFQSLVLTQKGELKK
APTGITKKIAPEYEEWMIALSKAIHQIISLKKRHEFSQFAIAALRTGQAYSQAWQQTKKE
SGLVDFNDMIETSVALLRTPGIGEWVRYKLDRTTDHILVDEAQDTNIFQWAIISALAEDF
FSGESAKSVEASRSIFAVGDFKQAIYGFQGTDPQAFVDARDYFNDKSQGSGREILDLSLN
RSFRSTPPILEMVDQMLADIESSCGGIGISQQTLQPHQSARSDLGGSVVLRQPISDYQED
GENTSEETDADDEEQLENGELELAIRLARQIESWLNPKTPLYLPALGRNAAPRDILILVR
NRGRLASLIVGCLHAQKIPVAGLDRLTLTAPLAVSDLLSAIRFVLQPDDDLTLACLLVSP
LIGWDQERLYRLAAKRAKKESLFDRLRKSEAEKETWDIIREWLSKADFITPYRFLEMLLS
GKGEGRRKLLERLGEEARDPINELLNAALLLESETTPSFQRFLDWFDSGDVEIKRDPSVR
QNTVRIMTVHGAKGLQAPVVILADATRDPHQLNGFRKEIITWPLDEANAPIPMPSNDDIA
YLPSDFGDIINEKKAKDLQEHWRLLYVAATRAEEYLVITGHLGSRAKNIPPKDSWYACAT
RAITAMGIAWQEDAMWQQKAVYHWEGRKKVTDIPKKQPTFPKEAMPSWIKNEIPEEPKPA
YPLRPSDLVKDNTSNPPPDGSSITAAKRGTLLHALFERLPMLPVEEREKAGLRWLETSAG
VKDAALRNSLIKDACDAMSNPVYRDIFSEKALAEAPIAAKVGEHVISGTVDRLWIDRDKK
RVHIVDFKTGRRVPATKEQVSEAYQRQLAAYVVALEKIFPDYAIEASLLYTTAPKLVSFE
QPFLHDYFVQMDKGDIQSENQI
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggctcatccacagcgattaatgcctttggaggcagaacagcttcaggcatccgatcct
aaagggaatatatggctgtcggcttctgctggaacggggaaaacgcatgttctgaccgca
cgggttctccggcttcttttaaatcgtgcagcaccagaaagcatcctttgcctgaccttc
accaaggctggggctgctgaaatgtcagagcgtatcaatcaacgactggcaaaatgggtc
attcagctaaacgatgacgagttaagagaagaattacaggctttgggggcgcgttacgat
cgggatacgctggctttagcgcgaacgctgtttgcgcgggtgctggatgcgccgggtggc
ttgcggatacaaacgatacacagcttttgccaatccttgctgacagctttcccagttgag
gcggggcttataccgggattccggctaatcgaagggcgagaagaggcgacagaggccaaa
aagacactgacccgaatactcgatcatcaaacaccaccttatcatatcaaagacgatgat
atcgctttattggctgaaaaactcggtgagcagggtgccgaagattatatctatcaatgc
cgtttccatgctttcgctttcaataatttaggggtggcgattgaaagtcgggtaaaacgc
gcgctggatttgcctttttcagacatcaatcaggctttggaagaagcctgcgatgacgat
cattttgattttgcgcttcttcgacagatcgccgaagctaatgaaaaatgggacacagcg
actgcccataaaaatctggccattattcaggattttgttgcggcttctcccgctgacagg
ctggcaagccttggtgatttccaaagcttggtcttaacgcaaaaaggggaattgaaaaaa
gcaccgactggtatcacgaaaaaaatcgcgcctgaatatgaagaatggatgatcgctctt
agcaaggcgattcaccagattatcagcctaaaaaaacgccatgaattttcgcaattcgcg
atagcggcacttcgtactggacaagcctatagtcaggcatggcaacagaccaagaaagaa
tcaggtctggtcgatttcaacgacatgattgaaaccagtgttgccttacttcggacgccg
ggtattggtgaatgggtgcgctataaactggatcggacaaccgatcatattctggttgat
gaagcgcaagacaccaatatttttcaatgggctattatctcagctttggccgaagatttc
ttctcgggtgaaagtgcaaaatccgttgaagcttctcgcagtatttttgccgttggtgac
tttaaacaggccatttatggcttccaaggcactgatcctcaggcctttgttgatgctcgt
gattattttaatgacaaatctcagggcagtggacgggaaattctcgatctgtctttaaac
cgttccttccggtcaactccgcctattttggagatggtcgatcaaatgctggccgatatt
gaaagcagttgcggcggcattggtattagtcagcaaaccctgcaaccccatcaatcagca
aggtctgatctgggcggaagcgttgtcttaaggcaaccaatctctgattatcaggaagac
ggcgaaaatacttcagaagagactgacgcagatgatgaagaacagctcgaaaatggcgaa
ttagaactggccattcgcttggcacgccagatagaatcttggcttaatccgaaaacgcct
ctttatctgcctgctttaggacgaaatgcagcaccaagggatatccttattctggtgcgt
aatcgaggaaggctggcttccttgattgtaggctgtcttcacgcccaaaaaattccggtc
gcgggtctcgaccgcttgacattgaccgcgcccttggctgtctctgatttgttatcggct
attcgctttgtgttacaaccggacgatgatttaaccttggcctgtctgctggtttcgcca
ttgatcggctgggatcaagaacgcctttataggcttgccgccaaaagagcgaaaaaagaa
agtctctttgaccgccttcggaaaagtgaagccgaaaaagaaacatgggatattattcgg
gaatggctttccaaggccgattttattacgccctatcgctttcttgaaatgctgttgagc
gggaagggtgaaggccgccgaaaattgttggaaaggcttggcgaagaggcgcgcgaccct
attaacgaattgctgaatgccgctttgctgttggaaagcgaaacaaccccgtcttttcag
cgttttctcgactggttcgacagcggagatgtcgaaatcaaacgcgacccatcggtgcga
caaaataccgtccgcatcatgactgtccatggtgcaaaaggcctacaagcccctgtcgtt
atcctcgctgatgccacccgcgatccgcaccaattaaacggcttcagaaaagaaatcatc
acttggccacttgatgaggcaaatgcgccaatcccgatgcctagtaatgacgatatcgct
tatctcccttccgattttggggacatcatcaacgagaagaaggccaaagatttacaagag
cattggcggcttctctatgtggcggcgacacgtgccgaagaatatctggtcatcactggc
catcttggcagtcgcgcgaaaaacattcctccaaaggatagctggtatgcctgcgcgacc
cgcgctatcacggctatgggtattgcatggcaagaagacgctatgtggcaacagaaagcg
gtttaccattgggaaggccgcaaaaaagttaccgatataccgaagaagcaacctaccttt
cctaaagaggctatgccctcatggatcaaaaatgaaataccggaagaacccaaacccgct
tatccattaagaccttccgatctggtaaaagataatacttctaacccgcctcctgatggc
agctctatcacggctgcaaagcgagggactttgttacatgctttgtttgaacgccttcct
atgcttcctgttgaagaacgggaaaaggctggactccgctggctcgagacttccgctggt
gtcaaggatgccgcgttacggaatagcctaataaaagatgcctgcgatgcgatgagtaac
cctgtttatcgcgatatcttttccgaaaaagctttggcggaagccccaattgcggccaaa
gtcggagaacatgttatttcaggaacggttgaccgcctttggatagatagggacaagaaa
cgggttcatatcgttgacttcaaaacaggcagacgggtacctgcaaccaaagaacaggtt
agtgaagcctatcaaaggcagttagccgcctatgttgttgctttggaaaagattttcccc
gattatgctatcgaggcttctttgctttatacgacggctccaaaactggtctccttcgag
caacccttcttgcatgattattttgtccaaatggacaaaggcgatattcagtcagagaat
cagatatag
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