Zymomonas mobilis subsp. mobilis CP4 = NRRL B-14023: ZCP4_0230
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Entry
ZCP4_0230 CDS
T02932
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
zmi
Zymomonas mobilis subsp. mobilis CP4 = NRRL B-14023
Pathway
zmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ZCP4_0230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zmi03019
]
ZCP4_0230
03016 Transfer RNA biogenesis [BR:
zmi03016
]
ZCP4_0230
Enzymes [BR:
zmi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ZCP4_0230
Messenger RNA biogenesis [BR:
zmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ZCP4_0230
Transfer RNA biogenesis [BR:
zmi03016
]
Prokaryotic type
tRNA degradation factors
ZCP4_0230
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
HTH_12
FaeA
Motif
Other DBs
NCBI-ProteinID:
AHB09560
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All DBs
Position
266208..268496
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AA seq
762 aa
AA seq
DB search
MTRSSKQKNNSDLPTSKQILEFISSSSQPVGKREVARHFGLKGQSKIALKALLKDMADEG
LIDSSPGRAFHLMGGLPKVTILKVIDSDGAGSVLAQPEKWQADHLPIPKVKIIEKKKKAG
LSEGDRVLVKTEQVDGEWHAFVLRKLIPAESGVLGILCLEGDKLWLKPVDKKVKKSWPVS
DAGNAELGELVLAEKAGRPPRVTARITQRLGDPFQPKSFSLIAIHKYNIPDHFSHEVLEE
AETVADLDLGNREDLTHLPIIAIDPADARDHDDAVWAAPDDNPDNKGGYQAVVAIADVSF
YVRPGTALDREARKRGNSVYFPDQVIPMLPEKLSGDVCSLKENVDRAALACHLTIGADGK
LKSWRFTRAKVRLAANIAYEDAQDAIDGKLTSPLTETVLKPLWACWEVLNHARKNRQPLG
LDLPERRVVLGEKGEILSVATRERLDAHQLIEDFMIAANIAAAKALEAKKAPVMYRVHEP
PSREKLVALRDYLKTFSIAFALGQVIKPQIFNHLIERLEVDEESRARIMEQILRSQTQAY
YSPANMGHFGLALGSYAHFTSPIRRYADLLVHRSLVGAYHLESGKPKLKSSHNNHTIPAT
TSLPPQDAENMSVIGEKISHAERRAMEAERETIDRYIAAYFSQYIGEIMPTRITGVREFG
FFATVPELGGDGLVPVSTLGHEYFRYDEATQSLEGQDSGTRYEIGQKIDLRLMEADPIGG
SLRFELPDSEPAVKMSRRGRGRSGIDPRLIKRRGRPANIRHR
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgacccgttcatcgaaacaaaaaaacaatagtgatctgcccacatccaagcagatcctc
gaatttatttcatcatcttctcaacccgttggcaaacgggaagtcgcgcgccatttcggt
ctgaaggggcaaagtaaaattgccttgaaggctttgctgaaagatatggcggatgaaggt
cttatcgattcttcaccgggtcgcgcttttcatctgatggggggattacctaaagtaact
attctaaaagtcattgatagcgatggtgcaggttctgttcttgcacagccagaaaaatgg
caggccgaccatttacctatccccaaagtcaaaatcattgaaaagaaaaagaaagctggc
ttgtccgaaggggacagggttctagttaaaaccgagcaggttgatggtgaatggcatgct
tttgttttaagaaaactcattcctgcagaaagtggcgttcttggaatcttatgccttgaa
ggcgacaaactctggctgaaacccgttgataagaaagtcaaaaaatcatggccggtttct
gatgccggtaatgcagaattgggtgaattagttctggctgaaaaggcagggcgaccacct
cgggtcaccgcaagaattactcaaaggttaggcgatcctttccagcctaaaagttttagc
ctgattgccattcacaaatataatattcctgatcatttctctcatgaagttttagaagaa
gctgaaacagttgccgatcttgatcttggtaaccgtgaagatttaactcatttgccgatt
attgcgattgatcctgccgatgccagagatcatgatgacgcggtttgggcagctcccgat
gataatcctgataataaaggcggatatcaagctgtagtagctattgccgatgtctctttt
tatgtccgaccgggaacagcccttgatcgtgaagcacgtaaaagggggaatagtgtttat
ttccctgatcaggttattcctatgttgccggaaaaattgtctggcgatgtctgttcgtta
aaggaaaatgtcgatcgggcggcacttgcttgtcatctgacgataggcgctgatggtaaa
ttgaaatcatggcggtttacgcgggcaaaagtgcggttggctgcgaatattgcctatgaa
gatgcccaagacgctattgatggaaaactaacaagcccgttaaccgaaactgttttaaaa
cctttatgggcgtgctgggaagtcttgaatcatgctcgtaaaaataggcaacctttagga
ttggatttacccgaaagacgggtggttctgggcgaaaaaggcgaaattctgtcagttgca
acacgcgaaaggctggatgcccatcagctaatcgaagatttcatgattgcggccaatatt
gcggctgccaaggctttggaagcgaaaaaagcgcctgtaatgtatcgggtgcatgaacct
cctagccgtgaaaaactggtcgcattaagagattatcttaagactttctctatcgctttc
gctttagggcaggtaattaaaccccaaattttcaatcatctgattgaacgcttggaagtt
gatgaggaatcccgcgcccgtatcatggagcagattttacggagccagacgcaagcctat
tattcaccggcaaatatgggacatttcggacttgccttgggtagttatgctcattttacc
agtcctatcaggcgttatgccgatttgctggtgcatcgctctttagtgggtgcctatcat
ctggaaagcggtaagcccaaactcaaatcatctcacaataatcacactattcctgcgaca
acttctttaccgccacaggatgcggaaaacatgtcagtcattggcgaaaagattagccac
gccgaaagacgggcaatggaagctgaacgagaaacaattgatcgatatattgcggcgtat
ttttcacaatatatcggtgaaattatgcccaccagaattacaggggtgcgggaattcggc
ttttttgcaactgttcctgaattgggtggggatggcttggttccagtctcaactttaggg
catgaatatttccgttatgatgaggccactcaaagccttgaagggcaggatagcggtacc
cgatatgagattggtcaaaagatagatttacgtctgatggaggcagatccaataggcggt
tccttgcgctttgaattgcccgattcggaacctgcggttaaaatgtcgcgccgtgggcga
gggcgcagcggtatcgatccccgcttgataaaaaggcgagggcggccagccaatatccgt
caccgctag
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