Zymomonas mobilis subsp. mobilis CP4 = NRRL B-14023: ZCP4_1053
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Entry
ZCP4_1053 CDS
T02932
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
zmi
Zymomonas mobilis subsp. mobilis CP4 = NRRL B-14023
Pathway
zmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ZCP4_1053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zmi03019
]
ZCP4_1053
03009 Ribosome biogenesis [BR:
zmi03009
]
ZCP4_1053
Enzymes [BR:
zmi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ZCP4_1053
Messenger RNA biogenesis [BR:
zmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ZCP4_1053
Ribosome biogenesis [BR:
zmi03009
]
Prokaryotic type
rRNA processing factors
ZCP4_1053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AHB10351
LinkDB
All DBs
Position
1184475..1187213
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AA seq
912 aa
AA seq
DB search
MTLTKMLIDARHREETRVAVIKGNRIEEFDFESADRRQLKGNIYLAKVTRVEPSLQAAFV
DYGGNRQGFLAFSEIHPDYYQIPREDREALLREEEEYSARHNKQQESEDDEEGEDLSDSE
AIRNDANDDSLENLRNRRRHFGRHHYRIQDVIRRRQVLLVQVVKEERGNKGAALTTYLSL
AGRYCVLMPNTSNGGGISRKISNLADRKRLKSIMAELNLPSSMGCIVRTAGLQRTKTEIK
RDFDYLARLWDEIREKTLLSQAPALIYGDSDLVKRAIRDIYSREIDEILVEGDDGYRAAR
NFMKLLMPSHVRKVRPYADPAPLFQRFGVEAQLNAMYQPIVQLKSGGYLVINPTEALVSI
DINSGRSTREHNIEQTATATNLEAAAEIARQLRLRDMAGLIVIDFIDMESSANIRRVEKA
MKDALKHDRARIQVGHISSFGLMEMSRQRLRTGMLEASTVPCPHCQGSGLMLTTPSAGLM
ALRMIEDEASRGNGSQIHVLTSLDSAIYVLNKKRKELGSIETLYGVTILIDGDPLRGNNQ
ISVESAGPPPSHGLMLPPPLPTSSPDEIDDYEEEPEIEEIEAEEVIEAPFRRNHRQNMAR
RNSSYNAEVAIQDNQRMEPKEATQAFLNTEEDASHEEDSEHSRRNRRSRRGRRGGRRRNG
ENFAEKPLMLSSEASEATSPDEDTPIKESYESEALPVEKDVAEKSTPTEETSEAENKTAR
SSRTRRRPRARSPKVESESYQAPANVLHEETPPTETAVVEVKNEEPIAEKPATEAETAVV
ASSEPETVEETKPKRVRKRTTTTRRKKAEPKTADKAEESEDSEAEAKPKRPATRRTRTTK
AATAKVAAKKAETESETPVVVKAEAKTIEKTDDTAIKSETPKDSDAAPVSDSKEEAEKPA
PRRGWWQRTFGE
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgactcttactaaaatgttaattgacgcccgccacagggaagaaacccgggttgccgtc
atcaaaggtaaccgtatcgaagaatttgattttgaatcggctgaccgtcgccaattaaaa
ggcaatatttatctggccaaggttacccgtgtcgaaccttccttacaggcggcttttgtc
gattatggcggcaatcgtcagggatttttagctttttcagaaattcaccccgattattat
caaattccccgcgaagaccgcgaagcgcttcttcgtgaggaagaagaatattctgcacgc
cataacaagcagcaggaaagtgaagatgatgaagagggcgaagatctctctgattccgaa
gccatccgcaacgatgccaatgatgacagcctcgaaaatttaagaaatcggcggcgacat
tttggacggcatcattaccggatacaggatgttatccggcggcggcaggttttgctggtt
caggttgtcaaagaagaacgcggtaacaaaggcgccgctctcacgacctatctttctttg
gctggtcgctattgcgtcttgatgccgaataccagcaatggcggcggtatttcccgcaaa
atttccaatctggccgatcggaaaagattaaagtccatcatggcagaattaaatctgcct
agctcaatgggctgcattgtcagaacggctggcctgcaacggacaaaaaccgaaatcaaa
cgcgatttcgattatcttgcccgcttatgggatgaaattcgcgaaaaaacgcttttgtca
caggctccggcgcttatctatggcgatagcgatcttgtgaaacgggctatccgtgacatc
tatagccgcgaaattgatgaaattctggtcgaaggcgatgacggttatcgggcggcacgg
aatttcatgaagctgttgatgcctagccacgtccgcaaagtgcggccttatgctgatccg
gcacctctgtttcagcgtttcggagtagaagcgcagcttaacgccatgtatcagccgatt
gttcagcttaaatcgggcggttatctggttatcaatccaaccgaagccttggtctcgatt
gatatcaactctggccgttcgacgcgtgaacataatattgagcagacggccaccgcaacc
aatctcgaagcggcagccgaaatcgcaagacagcttcgcctgcgcgatatggccggattg
attgtcatcgacttcattgacatggaatcaagcgccaatatccgtcgggttgaaaaggcc
atgaaagatgccttgaaacatgaccgcgcccgtattcaggtcggccatatttccagcttc
ggcctaatggaaatgagccgccaacgtttaagaaccggtatgctcgaagcctcgactgtc
ccctgcccgcattgccagggatcgggattgatgctgaccacgccttctgcaggtttgatg
gccttgcggatgatcgaagatgaagcctcacgcggcaatggcagccagattcacgttttg
acttcacttgattccgctatttatgtcctcaacaaaaagcggaaagaactgggcagcatc
gaaaccctttatggggtgacgatcctgatcgatggcgatcctctgcgtggcaataatcag
atatccgtagaatcggcagggcctccgcccagccatggcctgatgttaccaccgcctttg
ccgacttcctcaccagacgaaatcgacgattatgaggaagagccagagatcgaagagatc
gaagctgaagaggttatcgaagcccccttccgtcggaatcatcgccaaaatatggctcgt
cgcaattcgtcctataatgccgaagtagcgattcaggataaccaacgtatggagcccaaa
gaggctacacaggcgttcctgaatacggaagaagatgccagccacgaagaagacagcgaa
catagccgtcgtaatcgtcgcagtcggcggggcagacgaggcggtcgtcgtcgcaatggt
gaaaattttgccgaaaaacctttgatgctttcttcggaggcctcagaagccacatcgcct
gatgaggatacccccatcaaggaaagctatgaaagcgaagctctgccggtagaaaaagac
gttgcagaaaaaagcacgccgacagaagaaaccagcgaagcggaaaacaaaacagctcgc
agcagtcggacaagacgccgccctcgcgctcgctcacctaaagtagaaagcgaaagctat
caggcaccggcaaatgttcttcacgaagaaacgcctccgacagaaacagccgtcgtagaa
gtgaagaacgaagaaccgattgcagaaaaaccggccaccgaggcagaaacagcggtcgtc
gcttccagtgaacccgaaacggtagaagaaacaaaaccaaagcgggtcagaaaacggaca
acgactacccgtcgcaaaaaagcggaaccgaaaaccgcggacaaagccgaggagtcagaa
gacagcgaagccgaagccaagccaaaacgtccggcgacaagacggacgagaacgaccaaa
gccgctacagcaaaagtagccgctaaaaaggctgaaaccgaaagcgaaacgccagtcgtc
gtcaaggctgaagccaagacgattgaaaagacggatgacacggccatcaaatcagaaacc
cccaaggattctgatgctgcccctgtatccgacagcaaggaagaagctgaaaaaccagct
ccccgtcgtggttggtggcagcggacatttggtgaataa
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