KEGG   Zygotorulaspora mrakii: HG535_0A01250
Entry
HG535_0A01250     CDS       T06976                                 
Name
(RefSeq) uncharacterized protein
  KO
K12880  THO complex subunit 3
Organism
zmk  Zygotorulaspora mrakii
Pathway
zmk03013  Nucleocytoplasmic transport
zmk03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zmk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    HG535_0A01250
  09122 Translation
   03013 Nucleocytoplasmic transport
    HG535_0A01250
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zmk03019]
    HG535_0A01250
   03041 Spliceosome [BR:zmk03041]
    HG535_0A01250
Messenger RNA biogenesis [BR:zmk03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     HG535_0A01250
Spliceosome [BR:zmk03041]
 Complex C
  Other components
   EJC/TREX
    HG535_0A01250
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    HG535_0A01250
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40 Beta-prop_RIG_2nd WDR55 ANAPC4_WD40 Beta-prop_HPS5 EIF3I Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_WDR3_2nd Beta-prop_IFT140_1st WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd Beta-prop_Vps41 Beta-prop_NUP159_NUP214 WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd WD40_like Beta-prop_WDR35_TULP_N Pep3_Vps18 Beta-prop_RSE1_2nd PAN2_N Beta-prop_WDR19_1st eIF2A Hira Beta-prop_SCAP WDR90_beta-prop_4th UBZ_FAAP20 NBCH_WD40 Beta-prop_ACSF4 Beta-prop_LRRK2 Beta-prop_SPT8 DUF3858
Other DBs
NCBI-GeneID: 59233822
NCBI-ProteinID: XP_037141914
UniProt: A0A7H9AV84
LinkDB
Position
1:255580..256899
AA seq 439 aa
MDTPKVKNMKLLGQEVMSPELSNLLTEKLLSSIMDKPQIEDLEDERYIHVNTRSQSRFAV
PVNPNEVMSIEFHPSGKFLAYGRIDGSLTIWILDSSSYAKARKIYLADAIDIDKMVYSLS
WNANETSQFATVANTSEIFIWGIDEGKRSLTKLRTLTVGSKVKLFKCFYDPMGNWLLAVT
KSEELYLFNVRSDHEMHSTFDVKAIVPDDSIYCVSWNNSGSHIFLGLKSGKLVVLELDET
EGISVKSILSSHRASLNCVKMDPWGRYVVTGSTDGTCCIWDLKTLCCELCIDEFDCSVSQ
VDIDALGKILAICTTDGVVRFYDINSGHLFLQQKIKNSNSDVILLFKPDSTDLIISGKQD
ILQSHFTPNHYHDVLSLWKTVHEKSRSTSRNKNNISSTINNPDNTRRPNKRVRDHDRITN
NSKRERVSQRTSRFTDKRQ
NT seq 1320 nt   +upstreamnt  +downstreamnt
atggacactcccaaggtcaagaacatgaaactcttaggacaggaagttatgagtcctgaa
ttatccaatctcctcaccgaaaagctcctgtcaagcataatggataaaccacaaatagaa
gatttagaagacgaaagatacattcatgttaacacgagatcgcaatcaaggtttgcagta
cctgtaaaccctaatgaagttatgtctattgagtttcatccatccggcaaattcttagct
tacggtaggatcgatggctctttgaccatctggattttagacagttcgtcatatgcaaaa
gccagaaaaatatatttagcagatgctattgatatcgataaaatggtgtattcattgagt
tggaacgctaatgagacaagccagttcgctaccgttgcaaacacatcggaaattttcata
tggggaatagatgagggaaagagaagcttaacgaagttacgaacacttacggttggctcc
aaagtaaagctttttaaatgcttttacgatcccatgggcaattggcttctggcagttacc
aaatctgaggagttataccttttcaatgtgaggtcagatcacgaaatgcattcaactttt
gatgtcaaggcaattgtaccagatgattctatatattgtgttagctggaataacagtggc
tctcacattttcctaggcttgaagagtggaaaactggtggttctggaattagatgagaca
gaaggaatttctgtcaaaagtattttgtcctcccatagagcatcattaaattgtgtgaaa
atggatccatggggtagatatgtagtaactggaagtacggacggtacgtgctgtatttgg
gacttgaaaacattgtgctgtgaattatgtattgatgaatttgattgttctgtttctcaa
gttgacatagatgcactaggcaaaatcttagctatttgtaccacagatggcgtagtacga
ttttatgatataaattctggtcatttgttcctccagcaaaaaatcaagaattcaaactca
gatgtaattttgttattcaagcccgatagtacagatttaattatttctggtaaacaagat
atattacaaagccattttacccctaaccactaccatgacgttttatctctatggaaaaca
gtgcacgaaaaatcacgtagtacttctcgaaacaaaaataatataagcagtaccataaac
aacccagataataccaggagaccaaataagagggtaagagaccatgatagaataacaaat
aactctaaaagagaaagagtctctcaaaggactagcagattcacagacaagcgacaatag

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