Zygotorulaspora mrakii: HG535_0C04840
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Entry
HG535_0C04840 CDS
T06976
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
zmk
Zygotorulaspora mrakii
Pathway
zmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HG535_0C04840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zmk03019
]
HG535_0C04840
03041 Spliceosome [BR:
zmk03041
]
HG535_0C04840
03009 Ribosome biogenesis [BR:
zmk03009
]
HG535_0C04840
03016 Transfer RNA biogenesis [BR:
zmk03016
]
HG535_0C04840
Enzymes [BR:
zmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HG535_0C04840
Messenger RNA biogenesis [BR:
zmk03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
HG535_0C04840
Spliceosome [BR:
zmk03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
HG535_0C04840
Complex C
U4/U6.U5 tri-SnRNP related factors
HG535_0C04840
Ribosome biogenesis [BR:
zmk03009
]
Eukaryotic type
Pre-60S particles
Helicases
HG535_0C04840
Transfer RNA biogenesis [BR:
zmk03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
HG535_0C04840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
Death_3
nSTAND3
YodE
AAA_22
HTH_Tnp_ISL3
AAA_16
Motif
Other DBs
NCBI-GeneID:
59235828
NCBI-ProteinID:
XP_037143858
UniProt:
A0A7H9B0I3
LinkDB
All DBs
Position
3:945858..949106
Genome browser
AA seq
1082 aa
AA seq
DB search
MMEDDLFDAFNEDPAELPDLPLETIEEENAKLEDAGTNEIAPTTSKRSNSNRDGSDTEQD
NAEKVSLNKRKKQERKQIEEKKQSAVVPVVTDAFEQEASREVIASAGLMADEVSKSEQDG
KVKLSHQVRHQVALPPNYDYKPIGEHVRSNEARTYPFTLDPFQDTAISCIDRGESVLVSA
HTSAGKTVVAEYAIAQSLREKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPD
AGCLVMTTEILRSMLYRGSEVMREVAWVVFDEVHYMRDKERGVVWEETIILLPDKVHYVF
LSATIPNAMEFAEWVCKIHVQPCHIVYTDFRPTPLQHYLFPAHGEGIYLVVDEKSTFREE
NFQKAMASISSQSGDDPNSVDSRGKKGQTFKGGASKGDSKGDIYKIVKMIWKRKYNPVIV
FSFSKRDCEELALKMSKLDFNTEDEKDALTKIFNNAIALLPEADREIPQIKHILPLLRRG
IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRW
VSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMIL
NLMRVEGISPESMLESSFYQFQNVISVPIMEKQLAQLKAEVDSIQVDDEENVKQYYDIRQ
TLDGYNEDVRHVMTHPANALSFLQPGRLLNINIGNKDNYGWGVVVDFAKRMNKRSSNVEF
TDHESYIINVLVNTMYVDSPVNLIKPYNPSFPEGIRPAIDGEKTACAILPVTLESIRRIG
NIRLFMPKDVKAGGQKETVGKSLSEVSRRFPDGIPLIDPVKNMKIEDEDFAKLLRKIEVL
ESRLYSNPLSQSVRLGELYEKYSRKHSIQAEMKNLIRKINESQAVIQLDDLRRRKRVLRR
LGFCTQSDIIELKGRVACEISSGDELLLTELLFNGNLSELKPEQVAALLSCFAFQERCKE
APRLKPELAEPLKVLKETAAKIAKIMKESKIEVVEKDYVESFRHELMEVVYEWCRGASFT
QICKMTDVYEGSLIRMFKRLEELIKELVDVSNTIGNAALKEKMEAALNLIHRDIVSAGSL
YL
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggatgacctgttcgatgctttcaatgaagatcctgctgaactgccggatctg
ccgcttgaaactatagaagaggaaaatgcgaaactggaagatgcaggtactaatgaaata
gcacctacaacgtccaaaagatctaactcgaatcgagatggatctgatacagagcaagat
aatgcagaaaaagtctctttgaataaaaggaagaagcaagaaagaaaacagatcgaagaa
aaaaagcaatccgccgttgttcctgtcgtaacggatgcgtttgagcaagaggcatctcga
gaagttattgcttcagcgggacttatggccgatgaagtatccaaatcagaacaagacggt
aaggtcaagctgtcacatcaggttcgtcatcaagttgctttaccaccaaattacgattat
aaaccaattggtgagcatgtcagatcaaatgaagcaagaacttatcctttcacattagat
cctttccaagatactgcgatctcttgtatcgatagaggagagtctgttctagtgtcagca
catacatcggcaggtaagactgtcgtcgccgagtatgccattgcgcaatctttaagagag
aaacaaagggttatctatacatcacccatcaaagctttatccaaccaaaagtacagagaa
cttttggcagaattcggagatgtgggtcttatgactggtgacattaccataaatccagat
gctggttgccttgttatgacaaccgaaattctaaggagtatgttatacaggggtagtgaa
gttatgagagaagttgcatgggtagtatttgatgaagtgcattatatgagagacaaggaa
cgtggtgttgtgtgggaggaaacaattattcttttgccagataaggttcactacgttttc
ttatccgctactatccctaatgctatggagtttgccgagtgggtttgcaaaatccatgtt
caaccatgtcatattgtgtacaccgattttagacccactcctttgcaacattatttgttc
cctgctcatggtgaaggtatttacctagttgtcgatgaaaagagcacttttagagaggag
aactttcaaaaagcaatggcatctatcagcagccaatctggtgacgatccaaattctgtc
gactcaaggggaaaaaagggacaaaccttcaaaggaggcgcttcaaaaggtgattctaag
ggtgatatctacaagattgtaaaaatgatatggaaacgtaaatataatccagttatcgtc
ttctcctttagtaagcgtgattgcgaggaactggcgcttaaaatgtcgaaattagatttc
aatactgaggacgaaaaggatgccttgacaaaaatttttaacaatgctatcgccctatta
cctgaagccgatagagaaattcctcaaatcaagcatatcctccctcttttaagaagaggt
attggtattcatcattctggactgcttccaattttaaaagaagttattgaaatccttttc
caggaggggtttttgaaagtcttattcgccacggagaccttttctatcggattgaatatg
cctgcaaagacagttgtttttacctctgtgaggaaatgggatggacagcaatttcgttgg
gtttctggtggtgagtatattcagatgtctggacgtgcagggcgtcgtggtttggatgat
agaggtattgtcattatgatgattgatgaaaaaatggaaccacaggttgcaaaaggcatg
gtaaagggtcaggcagataggcttgattcagctttccatcttggttataatatgattttg
aacttgatgagagtcgaaggtatatctcctgaatccatgttggaaagttcattttatcaa
ttccagaatgtaatttctgttcctattatggaaaaacagcttgctcaattgaaagcagag
gttgacagtattcaagttgatgacgaagaaaatgtaaagcagtattacgatattaggcag
acgttggatggttataatgaagatgttcgtcatgtcatgactcatccagcaaacgcattg
agttttttgcaaccggggagattgctgaatatcaacattggtaacaaagataattacgga
tggggtgtagtagtagactttgcaaaaagaatgaataagcggagttcaaatgtagagttc
acagatcatgaatcttatatcatcaacgttttagttaataccatgtatgtggactctcca
gttaatttgataaagccttataaccctagcttcccagagggcatacgtcctgctatcgat
ggagagaaaactgcttgtgccatacttccggtgactttagaatctatccgtagaatagga
aatatcagactttttatgcctaaggatgtcaaggcaggtggtcagaaagagaccgtagga
aaatcgctaagcgaagttagccgaagatttcctgatggaattcctttaattgatccagtc
aagaatatgaagattgaggatgaagactttgcaaaattactcagaaagatcgaagtgcta
gaatcaagattatactctaatccgctctcccagtcagtaagattaggtgagttatacgaa
aagtacagtaggaagcactctatacaggccgaaatgaaaaatctaatacgtaagataaac
gaatcgcaagccgtgatccaattggatgatttacggcgtcgtaaaagagtactgcgtcga
ttgggattttgtacgcaaagcgatattatagagctaaagggtagagtggcttgtgaaata
tcgagtggtgatgaattattactcacggaacttcttttcaatggtaacttgagtgaattg
aaaccagaacaagtcgctgctttgctctcttgtttcgcttttcaggaacgttgtaaggag
gcaccccgtctaaaacctgaattggccgaaccattgaaagttttgaaagaaactgcagct
aaaattgcgaaaatcatgaaggagtctaaaatagaggttgtagaaaaggattacgtagag
agcttcaggcatgaattgatggaggttgtctatgagtggtgtagaggagcgagcttcaca
caaatatgtaaaatgacagatgtttatgaaggttctttgataagaatgttcaaaaggctg
gaagaattgatcaaagagctggtagatgtttctaatacaattggaaatgctgcattaaag
gaaaagatggaagctgccttgaacttaatacatagagatattgtttcggcgggttcacta
tatttatga
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