KEGG   Zygotorulaspora mrakii: HG535_0D00340
Entry
HG535_0D00340     CDS       T06976                                 
Name
(RefSeq) uncharacterized protein
  KO
K07573  exosome complex component CSL4
Organism
zmk  Zygotorulaspora mrakii
Pathway
zmk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:zmk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HG535_0D00340
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zmk03019]
    HG535_0D00340
Messenger RNA biogenesis [BR:zmk03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     HG535_0D00340
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     HG535_0D00340
SSDB
Motif
Pfam: EXOSC1 CSL4_N RRP4_S1 Phage_portal_2
Other DBs
NCBI-GeneID: 59236051
NCBI-ProteinID: XP_037144055
UniProt: A0A7H9B1G9
LinkDB
Position
4:84197..85069
AA seq 290 aa
MPEVSRSQFSFELPDTVVPGQLICPECDVCQTDGKNIVYRFVSGHGTMTQTYNKAGTQVA
AISATLVGFVKVQEELRDLSDNDEPQEEVDTMKDAETNVVRVEKVITISVLQNGTKMNIE
SSNNDFANNLPKEGDIVLTRVTRISQQRANVEILAVENAAIPVDSGIGSNGLGVIAAQGG
SGAATFSIAQASSDLGEMFRGIIRSQDVRATERDTVKIINCFKPGDIVRAQVLSLGDGTN
YYLSTARNDLGVVFAKAANGAGGLMYALDWQTMCVPSSGATENRKCAKPF
NT seq 873 nt   +upstreamnt  +downstreamnt
atgccagaagtatcgagatcacagttcagttttgagctaccagatacagttgtcccaggt
caattaatatgtcctgaatgcgatgtttgccaaacggatggcaaaaacatagtgtatcga
tttgttagtggtcatggaacaatgactcaaacatataataaagcaggaacgcaggtcgca
gcgatttccgccactttagttggctttgtaaaagtgcaggaggagttacgcgatctttca
gataatgatgaacctcaagaagaagtggacactatgaaagatgcagaaacaaatgttgtc
agggttgagaaggtcataaccatatctgtgttacagaatggtaccaaaatgaatattgag
tcttcaaataatgatttcgctaataatttaccaaaagagggagatattgtcttaacgagg
gtgacacgaatatcgcagcagagagcgaacgtcgaaatcctagcggttgaaaatgcagcg
attccagtcgatagtggaatagggagcaatggactgggtgtaatagctgcacaaggtgga
tctggagctgcaacattttccattgcacaagcgtcgtctgacttgggtgaaatgtttaga
ggtatcataaggtcacaagacgtacgtgctacggaaagagatactgttaaaataataaac
tgttttaagcctggtgatattgtgagggcacaagtattatcgttaggtgatggaaccaac
tattacttatcgacagcaagaaatgaccttggtgttgtattcgcaaaagcagcgaatgga
gctggcggcttaatgtacgccttagattggcagactatgtgtgttccaagtagtggcgct
acagaaaataggaaatgtgcgaaacctttctaa

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