Zymomonas mobilis subsp. mobilis ATCC 10988: Zmob_0647
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Entry
Zmob_0647 CDS
T01875
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
zmm
Zymomonas mobilis subsp. mobilis ATCC 10988
Pathway
zmm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zmm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Zmob_0647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zmm03019
]
Zmob_0647
03009 Ribosome biogenesis [BR:
zmm03009
]
Zmob_0647
Enzymes [BR:
zmm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Zmob_0647
Messenger RNA biogenesis [BR:
zmm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Zmob_0647
Ribosome biogenesis [BR:
zmm03009
]
Prokaryotic type
rRNA processing factors
Zmob_0647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AEH62489
UniProt:
A0A0H3FXH1
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All DBs
Position
757806..760544
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AA seq
912 aa
AA seq
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MTLTKMLIDARHREETRVAVIKGNRIEEFDFESADRRQLKGNIYLAKVTRVEPSLQAAFV
DYGGNRQGFLAFSEIHPDYYQIPREDREALLREEEEYSARHNKQQESEDDEEGEDLSDSE
AIRNDANDDSLENLRNRRRHFGRHHYRIQDVIRRRQVLLVQVVKEERGNKGAALTTYLSL
AGRYCVLMPNTSNGGGISRKISNLADRKRLKSIMAELNLPSSMGCIVRTAGLQRTKTEIK
RDFDYLARLWDEIREKTLLSQAPALIYGDSDLVKRAIRDIYSREIDEILVEGDDGYRAAR
NFMKLLMPSHVRKVRPYADPAPLFQRFGVEAQLNAMYQPIVQLKSGGYLVINPTEALVSI
DINSGRSTREHNIEQTATATNLEAAAEIARQLRLRDMAGLIVIDFIDMESSANIRRVEKA
MKDALKHDRARIQVGHISSFGLMEMSRQRLRTGMLEASTVPCPHCQGSGLMLTTPSAGLM
ALRMIEDEASRGNGSQIHVLTSLDSAIYVLNKKRKELGSIETLYGVTILIDGDPLRGNNQ
ISVESAGPPPSHGLMLPPPLPTSSPDEIDDYEEEPEIEEIEAEEVIEAPFRRNHRQNMAR
RNSSYNAEVAIQDNQRMEPKEATQAFLNTEEDASHEEDSEHSRRNRRSRRGRRGGRRRNG
ENFAEKPLMLSSEASEATSPDEDTPIKESYESEALPVEKDVAEKSTPTEETSEAENKTAR
SSRTRRRPRARSPKVESESYQAPANVLHEETPPTETAVVEVKNEEPIAEKPATEAETAVV
ASSEPETVEETKPKRVRKRTTTTRRKKAEPKTADKAEESEDSEAEAKPKRPATRRTRTTK
AATAKVAAKKAETESETPVVVKAEAKTVEKADDTAIKSETPKDSDAAPVSDSKEEAEKPA
PRRGWWQRTFGE
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgactcttactaaaatgttgattgacgcccgccacagggaagaaacccgggttgccgtc
atcaaaggtaaccgtatcgaagaatttgattttgaatcggctgaccgtcgccaattaaaa
ggcaatatttatctggccaaggttacccgtgtcgaaccttccttacaggcggcttttgtc
gattatggcggcaatcgtcagggatttttagctttttcagaaattcaccccgattattat
caaattccccgcgaagaccgcgaagcgcttcttcgtgaggaagaagaatattctgcacgc
cataacaagcagcaggaaagtgaagatgatgaagagggcgaagatctctctgattccgaa
gccatccgcaacgatgccaatgatgacagcctcgaaaatttaagaaatcggcggcgacat
tttgggcggcatcattaccggatacaggatgttatccggcggcggcaggttttgctggtt
caggttgtcaaagaagaacgcggtaacaaaggcgccgctctcacgacctatctttctttg
gctggtcgctattgcgtcttgatgccgaataccagcaatggtggcggtatttcccgcaaa
atttccaatctagccgatcggaaaagattaaagtccatcatggcagaattaaatctgcct
agctcaatgggctgcattgtcagaacggctggcctgcaacgaacaaaaaccgaaatcaaa
cgcgatttcgattatcttgcccgcttatgggatgaaattcgcgaaaaaacgcttttgtca
caggctccggcgcttatctatggcgatagcgatcttgtgaaacgggctatccgtgacatc
tatagccgcgaaattgatgaaattctggtcgaaggcgatgacggttatcgggcggcacgg
aatttcatgaagctgttgatgcctagccacgtccgcaaagtgcggccttatgctgatccg
gcacctctgtttcagcgtttcggagtagaagcgcagcttaacgccatgtatcagccgatt
gttcagcttaaatcgggcggttatctggttatcaatccaaccgaagccttggtctcgatt
gatatcaactctggccgttcgacgcgcgaacataatattgagcagacggccaccgcaacc
aatctcgaagcggcagccgaaatcgcaagacagcttcgcctgcgcgatatggccggattg
attgtcattgacttcattgacatggaatcaagcgccaatatccgtcgggttgaaaaggcc
atgaaagatgccttgaaacatgaccgcgcccgtattcaggtcggccatatttccagcttc
ggcctaatggaaatgagccgccaacgtttaagaaccggtatgctcgaagcctcgactgtc
ccctgcccgcattgtcagggatcgggattgatgctgaccacgccttctgcaggtttgatg
gccttgcggatgatcgaagatgaagcctcacgcggcaatggcagtcagattcacgttttg
acttcacttgattccgctatttatgtcctcaacaaaaagcggaaagaactgggcagcatc
gaaaccctttatggggtgacgatcctgatcgatggcgatcctctgcgtggcaataatcag
atatccgtagaatcggcagggcctccccccagccatggcctgatgttaccaccgcctttg
ccgacttcctcaccagacgaaatcgacgattatgaggaagagccagagatcgaagaaatc
gaagctgaagaggttatcgaagcccccttccgtcggaatcatcgccaaaatatggctcgt
cgcaattcgtcctataatgccgaagtagcgattcaggataaccaacgtatggagcccaaa
gaggctacacaggcgttcctgaatacagaagaagatgccagccacgaagaagacagcgaa
catagccgtcgtaatcgtcgcagtcggcggggcagacgaggcggtcgtcgtcgcaatggt
gaaaattttgccgaaaaacctttgatgctttcttcggaggcctcagaagccacatcgcct
gatgaggatacccccatcaaggaaagctatgaaagcgaagctctgccggtagaaaaagac
gttgcagaaaaaagcacgccgacagaagaaaccagcgaagctgaaaacaaaacagctcgc
agcagtcggacaagacgccgccctcgcgctcgctcacctaaagtagaaagcgaaagctat
caggcaccggcaaatgttcttcacgaagaaacgcctccgacggaaacagccgtcgtagaa
gtgaagaacgaagaaccgattgcagaaaaaccggccaccgaggcagaaacagcggtcgtc
gcttccagtgaacccgaaacggtagaagaaacaaaaccaaagcgggtcagaaaacggaca
acgactacccgtcgtaaaaaagcggaaccgaaaaccgcggacaaagccgaggagtcagaa
gacagcgaagccgaagccaagccaaaacgtccggcgacaagacggacgagaacgaccaag
gccgctacagcaaaagtagccgctaaaaaggctgaaaccgaaagcgaaacgccagtcgtc
gtcaaggctgaagccaagacggttgaaaaggcggatgacacggccatcaaatcagaaacc
cccaaggattctgatgctgcccctgtatccgacagcaaggaagaagctgaaaagccagct
ccccgtcgtggttggtggcagcggacatttggtgaataa
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