Zymomonas mobilis subsp. mobilis ATCC 10988: Zmob_1090
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Entry
Zmob_1090 CDS
T01875
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
zmm
Zymomonas mobilis subsp. mobilis ATCC 10988
Brite
KEGG Orthology (KO) [BR:
zmm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zmm03019
]
Zmob_1090
Enzymes [BR:
zmm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Zmob_1090
Messenger RNA biogenesis [BR:
zmm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Zmob_1090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_22
UvrD-helicase
AAA_11
nSTAND3
Flavi_DEAD
ABC_tran
DUF1400
Herpes_ori_bp
Motif
Other DBs
NCBI-ProteinID:
AEH62924
UniProt:
A0A0H3G2J9
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All DBs
Position
1264168..1266681
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AA seq
837 aa
AA seq
DB search
MLKNNALLKELPVSSIFEPLAETLRNRSNAVIIAPPGSGKTTAIAPILLQEDWCQGQIIL
LSPRRLAAKAAAERIAQIMGEPVGQTVGYLTRMESQRSDKSRILVVTQGIFRHQIQQDPE
LPNISAVLFDEVHERSLDSDFSLALALDVQSALRPDLRLIAMSATMDGTRFSDLMAEEGA
GKASLLESQGRCYPLHYYYEGRRPDLSIEQNMATVIRRALLENDGGILAFLPGIAEIERT
AALLENLPSNILLYRLHSSVDFREQHAAIQAVPKGYRKIVLASAIAETSLTLDGIRIVVD
SGLTRRARYDRQSGLTRLVTERVSRASAEQRAGRAGRQDVGYVWRLWEEAAQVGLSPYDP
PEITEADLSALTLDCALWGVTPNQLRWIDSPPEKAIEEAYKRLENLQATSSDKRPLPHGR
DLAAFPMPLPFGHMILKAKAKGWGALAVDVAVLLSERGIGGMDIDIENRLNRFYREKTLR
SQKARQLANRWRKQVGLTVSSKRDVIEMGDVGACVALAFPDRVAKRRDAKGEQWISAGGR
GFRLDPLSPLAQSEWLAVAEAQGSAQSARILSAATLTTEQINALFSEKIVVEQNVRFNFA
TKSVETERLQRLGAIILSRGQDDSPDEEAIASALMAAVQQYGLDILPWSDAALALQERWA
FVAAHQSEGGAFSDGGLSDDTLLSKVDEWLYPLLLGCRRLDQIKASDLTQALENILGWQG
KQQLDQWVPARLITPAGSSHVIDYKADGGPAVEVRPQALFGMKKHPMLLNGRVALVLRLV
SPAGRPIQTTQNLTDFWAGSWNMIAKEMRGRYPRHPWPEDPASAEPTLRTQKGRKIS
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagaataatgcccttctgaaagaattgccggtttcttctatttttgagccattg
gctgaaacactcagaaatcgaagcaatgcggttatcatagcacctccggggtcaggtaaa
acaacggcgattgcaccgattttgttacaagaagattggtgccaagggcagattatcctg
ctttcgccgcgtcgcttggcagccaaggcagccgctgaacgcatcgcgcaaataatgggg
gaacctgtcggccagacggtcggatatctgaccagaatggaatcgcaacggtcagataaa
agccgcatcttggtcgtgacccaagggatatttcgccatcagattcaacaagaccctgaa
ttaccgaatatctcggcagttttatttgacgaagttcacgaaagaagccttgatagcgat
ttttccttagctttggccttggatgtgcaatctgctttgcgccctgacttacgattgatc
gcaatgtcggcaaccatggacgggacacgcttttccgatctcatggcagaagagggcgct
ggtaaagcgtctcttcttgaaagccaagggcgatgttatcccttacattattactatgaa
ggccgccgtcctgatctttcaattgagcagaatatggcgactgttattcgtcgggcttta
ctcgaaaatgacggcggtattctcgcttttttaccgggtatcgccgagatagaacgcact
gcggctttattggaaaatctaccttccaatatcctgctctatcgtttgcatagttcagtt
gattttcgggaacagcatgcggctattcaggccgtgccaaaaggatatcgcaaaattgtt
ctggccagtgcgattgctgaaaccagcctaacattggatggtatccgcatcgttgttgat
tccggtttgacaagacgggcgcgttacgatcgtcaatcaggtttaacgcgattggttact
gaacgcgtcagtcgggcatcggctgaacagcgcgccggtcgtgctggtcggcaagatgtc
ggttatgtctggcgattatgggaagaagctgcccaagtcggtttgtcaccttacgatcct
cctgaaataacagaagccgatttgtcggctttgacattggattgtgctttatggggggta
acaccaaatcaattacgttggattgattccccaccggaaaaagcgatagaagaagcctat
aaacgcttggaaaatttacaggcgacttcttccgataagcgtcctttgccgcatggccgt
gatctggcagctttcccaatgccgttaccttttggtcatatgatattgaaggcaaaggca
aagggctggggggctttggccgttgatgttgccgttttgctttccgagcgcggcatcggc
ggcatggatattgacatcgaaaaccgtctcaatcgtttttatcgtgaaaaaacactccga
tcacaaaaagcacgtcaacttgccaatcgatggagaaaacaggtcgggttaaccgtttcc
tccaaaagggacgtgatcgagatgggcgatgtcggggcttgcgtggctttggcttttcct
gatcgtgtcgcaaaaaggcgtgatgccaaaggcgaacaatggatttccgctggcggcagg
gggttccgactagatccgttatcgcctttggcacaaagtgaatggttagccgtggccgag
gcgcaaggctcggcacaatcggcacgtattctgtcagctgcaactttaacgacagagcaa
atcaacgctcttttttctgaaaagatagtggttgaacaaaatgtccgttttaattttgca
accaaatctgttgaaaccgaacgcctacagcgattgggtgccattattctatcacgggga
caggatgattcccctgatgaagaagcaatcgcatcggctctgatggcggctgtccagcaa
tatggtcttgatattttaccgtggtcggatgcagctttagctttgcaggaaagatgggct
ttcgtggcagcacatcaatcagaagggggagccttttctgatggcggcttaagtgatgat
acccttttgtctaaagtcgatgaatggctttatcctttgctgttgggatgccgtcgtttg
gatcagataaaggcgtctgacctgacacaggccttagaaaatatactgggatggcaaggt
aaacagcagctcgatcaatgggttccggctagattgattacgcctgccggtagtagtcat
gtcattgattacaaagcagacggtgggcccgcggttgaagtccgtccgcaggctctattt
gggatgaaaaagcatccaatgcttttaaatggtcgggtggctttggtgttaagactggtt
tctcctgccggtaggcctatccagacaacccaaaatttaactgatttttgggcgggtagt
tggaatatgattgcgaaagaaatgcgcggtcgatatccacgccacccttggccagaagac
cccgcctcagcagaacctaccttaagaacacaaaaaggccgaaaaataagctaa
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