Zymomonas mobilis subsp. mobilis NCIMB 11163: Za10_0222
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Entry
Za10_0222 CDS
T01110
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
zmn
Zymomonas mobilis subsp. mobilis NCIMB 11163
Pathway
zmn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zmn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Za10_0222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zmn03019
]
Za10_0222
03016 Transfer RNA biogenesis [BR:
zmn03016
]
Za10_0222
Enzymes [BR:
zmn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Za10_0222
Messenger RNA biogenesis [BR:
zmn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Za10_0222
Transfer RNA biogenesis [BR:
zmn03016
]
Prokaryotic type
tRNA degradation factors
Za10_0222
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
HTH_12
FaeA
Motif
Other DBs
NCBI-ProteinID:
ACV74774
LinkDB
All DBs
Position
261741..264029
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AA seq
762 aa
AA seq
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MTRSSKQKNNNDLPTSKQILEFISSSSQPVGKREVARHFGLKGQSKIALKALLKDMADEG
LIDSSPGRAFHLMGGLPKVTILKVIDSDGAGSVLAQPEKWQADHLPIPKVKIIEKKKKAG
LSEGDRVLVKTEQVDGEWHAFVLRKLIPAESGVLGILCLEGDKLWLKPVDKKVKKSWPVS
DAGNAELGELVLAEKAGRPPRVTARITQRLGDPFQPKSFSLIAIHKYNIPDHFSHEVLEE
AETVADLDLGNREDLTHLPIIAIDPADARDHDDAVWAAPDDNPDNKGGYQAVVAIADVSF
YVRPGTALDREARKRGNSVYFPDQVIPMLPEKLSGDVCSLKENVDRAALACHLTIGADGK
LKSWRFTRAKVRLAANIAYEDAQDAIDGKITSPLTETVLKPLWACWEVLNHARKNRQPLG
LDLPERRVVLGEKGEILSVATRERLDAHQLIEDFMIAANIAAAKALEAKKAPVMYRVHEP
PSREKLVALRDYLKTFSIAFALGQVIKPQIFNHLIERLEVDEESRARIMEQILRSQTQAY
YSPANMGHFGLALGSYAHFTSPIRRYADLLVHRSLVGAYHLESGKPKLKSSHNNHTIPAT
TSLPPQDAENMSVIGEKISHAERRAMEAERETIDRYIAAYFSQYIGEIMPTRITGVREFG
FFATVPELGGDGLVPVSTLGHEYFRYDEATQSLEGQDSGTRYEIGQKIDLRLMEADPIGG
SLRFELPDAEPAVKMSRRGRGRSGIDPRLIKRRGRPANIRHR
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgacccgttcatcgaaacaaaaaaataataatgatctgcccacatccaagcagatcctc
gaatttatttcatcatcttctcaacccgttggcaaacgggaagtcgcgcgccatttcggt
ctaaaggggcaaagtaaaattgccttgaaggctttgctgaaagatatggcggatgaaggt
cttatcgattcttcaccgggtcgcgcttttcatctgatgggtggattacctaaagtaact
attctaaaagtcattgatagcgatggtgcaggttccgttcttgcacagccagaaaaatgg
caggccgaccatttacctatccccaaagtcaaaatcattgaaaagaaaaagaaagctggc
ttgtccgaaggggacagggttctagttaaaaccgaacaggttgatggtgaatggcatgct
tttgttttaagaaaactcattcctgcagaaagtggcgttcttggcatcttatgccttgaa
ggcgacaaactctggctgaaacccgttgataagaaagtcaaaaaatcatggccggtttct
gatgccggtaatgcagaattgggcgaattagttctggctgaaaaggcagggcgaccacct
cgggtcaccgcaagaattactcaaaggttaggcgatcctttccagcctaaaagttttagc
ctgattgccattcacaaatataatattcctgatcatttctctcatgaagttttagaagaa
gctgaaacagttgccgatcttgatcttggtaaccgtgaagatttaactcatttgccgatt
attgcgattgatcctgccgatgccagagatcatgatgacgcggtttgggcagctcccgat
gataatcctgataataaaggcggatatcaagctgtagtagctattgccgatgtttctttt
tatgtccgaccgggaacagcccttgatcgtgaagcgcgtaaaagagggaatagtgtttat
ttccctgatcaggttattcctatgttgccggaaaaattgtctggcgatgtctgttcgtta
aaggaaaatgtcgatcgggcggcacttgcttgtcatctgacgataggcgctgatggtaaa
ttgaaatcatggcggtttacgcgggcaaaagtgcggttggctgcgaatattgcctatgaa
gatgcccaagacgctattgatggaaagataaccagcccgttaaccgaaactgttttaaaa
cctttatgggcgtgctgggaagtcttgaatcatgctcgtaaaaataggcaacctttaggg
ttggatttacccgaaagacgggtggttctaggcgaaaaaggcgaaattctgtcagtcgca
acacgcgaaaggctggatgctcatcagctaatcgaagatttcatgattgcggccaatatt
gcggctgccaaggctttggaagcgaaaaaagcgcctgtaatgtatcgggtgcacgaacct
cccagccgtgaaaaactggtcgcattaagagattatcttaagactttctctatcgctttc
gctttagggcaggtaattaaaccccaaattttcaatcatctgattgaacgcttggaagtt
gatgaggaatcccgcgcccgtatcatggagcagattttacggagccagacgcaagcctat
tattcaccggcgaatatgggacatttcggacttgccttgggtagttatgctcattttacc
agtcctatcaggcgttatgccgatttgctggtacatcgctctttagtgggtgcctatcat
ctggaaagtggtaagcccaaactcaaatcatctcacaataatcacactattcccgcgaca
acttctttaccgccacaggatgcggaaaacatgtcagtcattggcgaaaagattagccac
gccgaaagacgggcaatggaagctgaacgagaaacaattgatcgatatattgcggcgtat
ttttcacaatatatcggtgaaattatgcccaccagaattacaggggtgcgggaattcggc
ttttttgcaactgttcctgaattaggtggggatggcttggttccggtctcaactttaggg
catgaatatttccgttatgatgaagccactcaaagccttgaagggcaggatagcggtacc
cgatatgagattggtcaaaagatagatttacgtctgatggaggctgatccaataggcggt
tccttgcgctttgaattgcccgatgcggaacctgcggttaaaatgtcgcgccgtgggcga
gggcgcagcggtatcgatccccgcttgataaaaaggcgagggcggccagccaatatccgt
caccgctag
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