Zymomonas mobilis subsp. mobilis NCIMB 11163: Za10_1571
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Entry
Za10_1571 CDS
T01110
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
zmn
Zymomonas mobilis subsp. mobilis NCIMB 11163
Pathway
zmn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zmn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Za10_1571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zmn03400
]
Za10_1571
Enzymes [BR:
zmn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Za10_1571
DNA repair and recombination proteins [BR:
zmn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Za10_1571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
Helicase_C
UvrB_inter
DEAD
CarD_TRCF_RID
MFD_D3
Cas3-like_C_2
UB2H
SNF2-rel_dom
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ACV76109
LinkDB
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Position
complement(1808000..1811503)
Genome browser
AA seq
1167 aa
AA seq
DB search
MFVNPAQILKAEQPLTLSGVENGFKPLILSDLARALQAKSKAGRLVYIASDEQAAHAMAD
AAGYFAPELKIISFPAWDCLPYDRASPSLPLSATRIATLHHLQTRPQSPELLITTVEAAL
QRLLTPFRLRQLCQTLAAGVRLDREKLVTLLRAHGYQQSETVSQSGDYAIRGGLVDLWPA
GLPYALRLDFFGDEIETLRQFDPTTQRSIAEIDKFNLLPASEALLDAENIKRFRSHYREI
FGAAATTDPLYQAVSEGRRLAGMEHWLPLFEEKLVTLWDHLAEEDAVFYDQACLKVAEQH
FEAIQDYYSHRKNPQSQESGSYRPLKPDLLYLDDAAWQERLQISKAHQITAFHIPPAPDV
IDLESTLPRDFAPERQQGSNIYEAVVDYIGALNNQNKRVIIACYSKGSRERLTGLLQDHG
LKRTLAADNWQEALAAADSSRSQVTGAAVMLLPLDHGFIAGDVALLSEQDILGDRLVRRA
KKRKSADAFMAELATLSIGDLVVHSDHGIGCYDGLVSIPVGNAPHDCVALSYQGGDKLYV
PVENIDTLSRYGNASESTVLDKLGGVAWQARKSKMKERIRAIAGQLMATAAQRALRQAPV
ALADPASYPVFVDRFPYQETEDQEHAISDVIEDLAKGKPMDRLICGDVGFGKTEVALRAA
FVTAMSGLQVALVCPTTLLARQHYSNFLERFEGFPLQIGRLSRLVPAKEAKACREALADG
TIDIVIGTHAILSKTIDFNRLGLVIVDEEQHFGVVHKERLKALKNDVHQLTLTATPIPRT
LQMAMSGLRELSVIQTPPVDRLAVRSYVMPWDPVAIREALLREHYRGGQSFIVVPRISDL
ADLEKFLSEQVPEIRFVIAHGQMAATEVENRMSAFYDKKFDVLLSTTIVESGLDIPSANT
MIVYRADRFGLSQLYQIRGRVGRSKTRAYAYLTTPVNHSISETAEKRLHILSTLDSLGAG
FQLASHDLDIRGAGNLLGDEQSGHIKEVGFELYQSMLEDAILVAKSGGLIDEKENEEFSP
QITVDAPILIPEDYVPDLGLRMALYRRMNQIKNREEIESFAAEMIDRFGSLPSETKNLLA
VIEVKMNCRQAHIGRLDVGPRGALITFHNDNFPNVTGLLAYIQKLKGTAKLRPDQKLVIQ
RNWPDPKSRLNGLVQLSRGLAKVAIAS
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtaaatccggcgcagatattaaaagcagaacagcccttgaccttgtccggcgtg
gaaaatggtttcaagcctttaattctgtctgaccttgcccgagccttgcaggcaaaaagt
aaagcgggtcggttggtttatatagcctctgatgaacaggcagcgcacgccatggctgat
gcggcggggtattttgcaccggaattaaaaattatctcttttccggcttgggattgtctg
ccttatgatcgggcatcaccttccctgcccctttctgcgaccagaatagcgactttacat
catcttcaaacgcgcccgcaatcgccggaattactaattacaacggtagaggccgcgttg
cagcggttattgacgcctttccgattacgacagctttgccagaccttggccgccggtgtt
cgattggatcgggaaaaactggttacgctgttacgagcgcatggctatcaacaaagcgaa
accgtcagtcagtcgggggattatgctatccgtggtggcttggtcgatttatggccagcg
ggtttaccttatgccctgcgtctcgatttttttggtgacgagatagaaacgctacggcaa
ttcgatccaacaacgcagcgcagcatagccgaaattgataaattcaatcttttacccgct
tcagaagccttgctggatgctgagaatatcaagcgtttccgcagccattaccgcgaaatc
tttggcgcggcggcaaccactgatccgctttatcaggcggtatcagaaggacggcggctg
gcaggaatggaacattggttacctttatttgaagaaaagctggtcaccttatgggatcat
ctcgccgaagaagatgcggttttctatgaccaagcctgcttgaaagtagccgaacagcat
tttgaagctattcaagattactatagccaccgcaaaaatcctcagagtcaggaatccggt
agctatcgtccgttgaaacccgatttactgtatcttgatgatgcggcttggcaagagcgc
cttcaaatatcaaaagcccatcagataacggcttttcatataccccctgcgcctgatgtt
attgatctggaatcaactctgccgcgtgatttcgcgcccgaaagacagcaaggcagcaat
atttatgaagcggttgttgactatattggcgcactgaacaaccagaataagcgggttatt
attgcctgctattccaaagggtcacgagaaagattgaccggcctgttacaggatcacggt
ttaaaaagaacgctggcagccgataactggcaggaagccttggccgctgctgatagcagc
cgatctcaagtaaccggcgcggcggtcatgctcttgccgctcgatcatggttttattgcc
ggtgatgtcgccctgttaagcgaacaggatattttaggcgacaggctggttagaagagcg
aaaaagcgaaaatcggctgatgcctttatggcggagttggcaacgctctctatcggtgat
ttggtggtgcatagcgatcacggtattggttgctatgacgggttagtgtcgatcccagtc
ggcaatgcgccgcatgactgcgttgccttgagctatcaaggcggtgacaagctctatgtg
ccggttgaaaatatcgacaccctgagccgctatggcaatgccagtgaaagcaccgtttta
gacaagctgggcggcgtggcatggcaggccagaaaatccaaaatgaaagagcgcattcgc
gctattgccggtcagttgatggcgactgctgcccaaagggcgttaagacaagcccctgtc
gcattggctgatccggccagctatccggtttttgttgatcgttttccttatcaggaaacc
gaagatcaggaacatgccatttctgatgtcatcgaggatttagccaaagggaaaccgatg
gataggctgatctgtggtgatgtcggtttcggtaaaacagaagtcgccttgcgagctgcc
tttgttaccgccatgtcaggattacaggttgccttggtttgcccgaccaccttgttggcg
cgacagcattacagcaattttctcgaaagatttgaaggcttcccgcttcaaattggtcgt
ctttctcgattagtgcctgcgaaagaagccaaagcctgccgtgaagctttggcggatgga
acgattgatatcgttattggcacccatgccattttatcgaaaacgattgatttcaaccgt
ctgggcttggttattgtcgatgaagaacagcatttcggcgttgtccataaagagcgcctg
aaagccctgaaaaatgatgttcatcaacttaccttgaccgcaacgcctatcccaaggacg
ctgcaaatggcgatgtcaggccttagggagctatcggttatccaaactccgcctgtcgac
cgcttggctgtcagaagctatgtcatgccttgggaccctgtagcgatccgtgaagcctta
ttgcgggagcattatcgcggcggccagagctttattgtggttccaagaatttccgacctt
gctgatctcgaaaaattcctgtcggaacaggtgccggaaatccggtttgttattgctcat
ggtcaaatggcagctaccgaagtcgaaaaccggatgtcggctttctatgacaaaaaattt
gatgttttgctttcgacaacgattgtcgaatccggtctggacatccccagtgcgaatacg
atgattgtctatcgggcggatcgttttggcctgtcacagctttaccagatcaggggtcgc
gttggacgctctaagacccgcgcctatgcttatctaacaacgccggttaaccattctatc
agcgaaacagccgaaaaaaggctgcatatcctttcaactttggattcattgggggctggt
ttccaattagccagccatgatcttgatattcgcggtgcgggtaatttgttgggggatgag
caatctggccatattaaagaagtcggttttgaattgtatcaatcaatgttggaagatgcg
attttggtcgccaaatctggcggattgattgacgaaaaagaaaatgaagaattttcaccc
cagattacggttgatgcgcctattctgattcctgaagactatgtgcctgatctgggtctt
agaatggctttgtatcgccggatgaaccagatcaagaatcgcgaagagatcgaatcattt
gcagccgaaatgatcgaccgttttgggtcattgcctagcgagaccaaaaatctgttagcc
gtgattgaagtaaaaatgaattgccgccaagcgcatatcggtcgccttgatgtcgggccg
cggggtgctctgattactttccataatgacaatttcccaaatgtcaccggattgctggcc
tatattcagaaattaaaaggcactgccaaattaagacccgatcagaagctggttattcag
cgcaactggcctgatcctaaaagccgcctgaatggattggtgcagctttcccgtggcttg
gccaaagtagcgattgcgtcataa
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