Zymomonas mobilis subsp. mobilis ZM4: ZMO1417
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Entry
ZMO1417 CDS
T00221
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
zmo
Zymomonas mobilis subsp. mobilis ZM4
Pathway
zmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ZMO1417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zmo03019
]
ZMO1417
Enzymes [BR:
zmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ZMO1417
Messenger RNA biogenesis [BR:
zmo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ZMO1417
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
HEAT_DAAF5
AAA_22
AAA_19
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AAV90041
UniProt:
Q5NML9
LinkDB
All DBs
Position
1427508..1428884
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AA seq
458 aa
AA seq
DB search
MTETSVSFKTLGLDSSLVQALDGLGYSKPTPIQAQAIPHLLEGKDLCGIAQTGTGKTAAF
ALPSIHYLATNPQARPQRGCRMLILSPTRELASQIARACNDYTRHLRMSVNAVFGGVPIG
RQMRMLDRGTDILVATPGRLLDLIDQRALVLKDVEVFVLDEADQMLDLGFIHALRRIDKL
LPKNRQTLFFSATMPKTIQELSSQFLSDPVTVSVAPQSSTAERVEQFGIFVNQSEKQALL
TITLKNTPGLDRALVFTRTKHGADRVVRHLEAAGLPAAAIHGNKSQPQRERALNAFRNGR
LKILVATDIAARGIDVPGVSHVFNYELPNVAEQYVHRIGRTARAGRDGQAISFIANDERS
YLRSIERLTRVKLQILPLPENFVMEKELLPHPAPMRPERDGRDGRGGRGGGRGRFGGGAK
PGFNHSHGKGDDRGDRGGERPRRPRRPQMRGVRAVARS
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgacggaaacatctgtttcgttcaaaacccttggtctcgactcgtcccttgtgcaggct
ctggatggtctcggttatagtaagccgaccccgattcaggcacaagctatcccccattta
ttagaaggcaaggatctttgcggtatcgcccagaccggcaccggtaaaaccgcagccttt
gctctgccttctattcattatctcgcaaccaacccgcaggcacggcctcagcgtggttgc
cgtatgctgattttatcaccgacgcgcgaactggccagccagattgcccgcgcttgcaat
gactatacccgtcatctgcgtatgtcggttaatgccgtatttggtggcgttcctattggt
cgtcagatgagaatgctggatcgtggcaccgatattttggttgcaacacccggtcgcttg
ctggatttgatcgaccagcgcgcgcttgtcttaaaagacgtcgaagttttcgtcttggac
gaagccgaccagatgctggatcttggttttatccatgcgttgcgtcgcattgataaattg
ctgccgaagaaccgccagactttgttcttctcggctacgatgccaaaaacgattcaggaa
ttgagcagtcagttcttgtctgatccggtaaccgtttcggttgcgccccagtcttcaacg
gctgaacgggttgaacaattcggtattttcgttaaccagtctgaaaaacaggctttgttg
acgattacgctgaaaaatacccctggccttgatcgggctttggtctttacccgcacgaag
catggtgccgatagagtggttcgccatttggaagccgctggtctgcctgctgccgccatt
catggtaacaaaagccagccgcagcgtgaacgcgctttgaatgcgttccgtaatggtcgg
ttaaaaattctggtcgccaccgatattgctgcccgtggtattgacgttccgggtgtcagc
catgtcttcaattacgaattgccgaatgttgccgaacaatatgtccatcgtattggccgc
actgcccgtgcgggtcgtgatggtcaggctatcagctttattgccaatgacgaacgctct
tacttgcgctctatcgaacgtttgactcgtgtcaaattgcagattttgccgctgcctgaa
aactttgtcatggaaaaagaattgctgccgcatccggctccgatgcgtccagaacgggat
ggcagagatggtcgcggtggtcgtggcggtggtcgcggtcgctttggcggcggtgcaaaa
ccgggtttcaaccactctcatggtaaaggtgatgatcgtggtgatcgcggtggtgaacgt
ccgcgtcgtccgcgtcgtccgcagatgcgtggtgttcgtgccgttgctcgtagctaa
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