Zymomonas mobilis subsp. mobilis ZM4: ZMO1646
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Entry
ZMO1646 CDS
T00221
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
zmo
Zymomonas mobilis subsp. mobilis ZM4
Pathway
zmo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ZMO1646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zmo03400
]
ZMO1646
Enzymes [BR:
zmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ZMO1646
DNA repair and recombination proteins [BR:
zmo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ZMO1646
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
Helicase_C
UvrB_inter
DEAD
CarD_TRCF_RID
MFD_D3
Cas3-like_C_2
UB2H
SNF2-rel_dom
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AAV90270
UniProt:
Q5NLZ0
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All DBs
Position
1688749..1692252
Genome browser
AA seq
1167 aa
AA seq
DB search
MFVNPAQILKAEQPLTLSGVENGFKPLILSDLARALQAKGKAGRLVYIASDEQAAHAIAD
AAGYFAPELKIISFPAWDCLPYDRASPSLPLSATRIATLHHLQTRPQSPELLITTVEAAL
QRLLTPFRLRQLCQTLAAGVRLDREKLVTLLRAHGYQQSETVSQSGDYAIRGGLVDLWPA
GLPYALRLDFFGDEIETLRQFDPTTQRSIAEIDKFNLLPASEALLDAENIKRFRSHYREI
FGAAATTDPLYQAVSEGRRLAGMEHWLPLFEEKLVTLWDHLAEEDAVFYDQACLKVAEQH
FEAIQDYYSHRKNPQSQESGSYRPLKPDLLYLDDSAWQERLQISKAHQITAFHIPPAPDV
IDLESTLPRDFAPERQQGSNIYEAVVDYIGALNNQNKRVIIACYSKGSRERLTGLLQDHG
LKRTLAADSWQEALAAADSSRSQVTGAAVMLLPLDHGFIAGDVALLSEQDILGDRLVRRA
KKRKSADAFMAELATLSIGDLVVHSDHGIGCYDGLVSIPVGNAPHDCVALSYQGGDKLYV
PVENIDTLSRYGNASESTVLDKLGGVAWQARKSKMKERIRAIAGQLMATAAQRALRQAPV
ALADPASYPVFVDRFPYQETEDQEHAISDVIEDLAKGKPMDRLICGDVGFGKTEVALRAA
FVAAMSGLQVALVCPTTLLARQHYSNFLERFEGFPLQIGRLSRLVPAKEAKACREALADG
TIDIVIGTHAILSKTIDFNRLGLVIVDEEQHFGVVHKERLKALKNDVHQLTLTATPIPRT
LQMAMSGLRELSVIQTPPVDRLAVRSYVMPWDPVAIREALLREHYRGGQSFIVVPRISDL
ADLEKFLSEQVPEIRFVIAHGQMAATEVENRMSAFYDKKFDVLLSTTIVESGLDIPSANT
MIVYRADRFGLSQLYQIRGRVGRSKTRAYAYLTTPVNHSISETAEKRLHILSTLDSLGAG
FQLASHDLDIRGAGNLLGDEQSGHIKEVGFELYQSMLEDAILVAKSGGLIDEKENEEFSP
QITVDAPILIPEDYVPDLGLRMALYRRMNQIKNREEIESFAAEMIDRFGSLPSETKNLLA
VIEVKMNCRQAHIGRLDVGPRGALITFHNDNFPNVTGLLAYIQKLKGTAKLRPDQKLVIQ
RNWPDPKSRLNGLVQLSRGLAKVAIAS
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtaaatccggcgcagatattaaaagcagaacagcccttgaccttgtccggcgtg
gaaaatggtttcaagcctttaattctgtctgaccttgcccgtgccttgcaggcaaaaggt
aaagcgggtcggttggtttatatagcctctgatgaacaggcagcgcacgccatagctgat
gcggcggggtattttgcaccggaattaaaaattatctcttttccggcttgggattgtctg
ccttatgatcgggcatcaccttccctgcccctttctgcgaccagaatagcgacgttacat
catcttcaaacgcgcccgcaatcgccggaattactaattacaacggtagaggccgcgttg
cagcggttattgacgcctttccgattacgacagctttgccagaccttggccgccggtgtt
cgattggatcgggaaaagctggttacgctgttacgagcgcatggctatcaacaaagcgaa
accgtcagtcagtcaggggattatgctatccgtggtggcttggtcgatttatggccagcg
ggtttaccttatgccctgcgtctcgatttttttggtgacgagatagaaacgctacggcaa
ttcgatccaacaacgcagcgcagcatagccgaaattgacaaatttaatcttttacccgct
tcagaagccttgctggatgctgagaatatcaagcgtttccgcagccattaccgcgaaatc
tttggcgcggcggcaaccactgatccgctttatcaggcggtatcagaaggacggcggctg
gcgggaatggaacattggttacctttatttgaagaaaagctggtcaccttatgggatcat
ctcgccgaagaagatgcggttttctatgaccaagcctgcttgaaagtagcagaacagcat
tttgaagctattcaagattactatagccaccgcaaaaatccccagagtcaggaatccggt
agctatcgtccgttgaaacccgatttactgtatcttgatgattcggcttggcaagagcgc
cttcaaatatcaaaagcccatcagataacggcttttcatataccccctgcgcctgatgtt
attgatctggaatcaactctgccgcgtgatttcgcgcccgaaagacagcaaggcagcaat
atttatgaagcggttgttgactatattggcgcactgaacaaccagaataagcgggttatt
attgcctgctattccaaagggtcgcgagaaagattaaccggcctgttacaggatcacggt
ttaaaaagaacgctggcagccgatagctggcaggaagccttggccgctgctgatagcagc
cgatctcaagtaaccggcgcggcggtcatgctcttgccgctcgatcatggttttattgcc
ggtgatgtcgccctgttaagcgaacaggatattttaggcgacaggctggttagaagagcg
aaaaagcgaaaatcggctgatgcctttatggcggagttggcaacgctctctatcggtgat
ttggtggtgcatagcgatcacggtattggttgctatgacgggttagtgtcgatcccagtc
ggcaatgcgccgcatgactgcgttgccttgagctatcaaggcggtgacaagctctatgtg
ccggttgaaaatatcgatacccttagccgctatggcaatgccagtgaaagcaccgtttta
gacaagctgggcggcgtggcatggcaggccagaaaatccaaaatgaaagagcgcattcgc
gctattgccggtcagttgatggcgactgctgcccaaagggcgttaagacaagcccctgtc
gcattggctgatccggccagctatccggtttttgttgatcgttttccttatcaggaaacc
gaagatcaggaacatgccatttctgatgtcatcgaggatttagccaaagggaaaccgatg
gataggctgatctgtggtgatgtcggtttcggtaaaacagaagtcgccttgcgagccgcc
tttgttgccgccatgtcaggattacaggttgccttggtttgtccaaccaccttgttggcg
cggcagcattacagcaattttctcgaaagatttgaaggcttcccgcttcaaattggtcgt
ctttctcgattggtgcctgcgaaagaagccaaagcctgccgtgaagctttggctgatgga
acgattgatatcgttattggcacccatgctattttatcgaaaacgattgattttaaccgt
ctgggcttggttattgtcgatgaagaacagcatttcggcgttgtccataaagagcgcctg
aaagccctgaaaaatgatgttcatcaacttaccttgaccgcaacgcctatcccaaggacg
ctgcaaatggcgatgtcaggccttagggagctatcagttatccaaaccccgcctgtcgac
cgcttggctgtcagaagctatgtcatgccttgggaccctgtagcgatccgtgaagccttg
ttgcgggagcattatcgcggcggccagagctttattgtggttccaagaatttccgacctt
gctgatctcgagaaattcctgtcggaacaggtgccggaaatccggtttgttattgcccat
ggtcaaatggcagctaccgaagtcgaaaaccggatgtcggctttctatgacaaaaaattt
gatgttttgctttcgacaacgattgtcgaatccggtctggacatccccagtgccaatacg
atgattgtctatcgggcagatcgttttggcctgtcacagctttaccagatcaggggtcgc
gttggacgctctaagacccgcgcctatgcttatctaacaacgccggttaaccattctatc
agcgaaacagccgaaaaaaggctgcatatcctttcaactttggattccttgggggctggt
ttccaattagccagccatgatcttgatattcgcggtgcgggtaatttgttgggggatgag
caatccggccatattaaagaagttggttttgaattgtatcaatcaatgttggaagatgcg
attttggtcgccaaatctggcggattgattgacgaaaaagaaaatgaagaattttcaccc
cagattacggttgatgcgcctattctgattcctgaagactatgtgcctgatctgggtctt
agaatggctttgtatcgccggatgaaccagatcaaaaatcgcgaagagatcgaatcattt
gcagccgaaatgatcgaccgttttgggtcattgcccagcgagaccaaaaacctgttagcc
gtgattgaagtaaaaatgaattgccgccaagcgcatatcggtcgccttgatgtcgggccg
cggggtgctttgattactttccataatgacaatttcccaaatgtcaccggattgctggcc
tatattcagaaattaaaaggcactgccaaattaagacccgatcagaagctggttattcag
cgcaactggcctgaccctaaaagtcgcctgaatggattggtgcagctttcccgtggcttg
gccaaagtagcgattgcgtcataa
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