Zymomonas mobilis subsp. mobilis ZM4: ZMO1996
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Entry
ZMO1996 CDS
T00221
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
zmo
Zymomonas mobilis subsp. mobilis ZM4
Pathway
zmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ZMO1996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zmo03021
]
ZMO1996
03019 Messenger RNA biogenesis [BR:
zmo03019
]
ZMO1996
Transcription machinery [BR:
zmo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ZMO1996
Messenger RNA biogenesis [BR:
zmo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ZMO1996
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
OB_RNB
Spore_III_AA
NACHT
AAA_22
S1CSD-TOTE-2
AAA_25
AAA_14
AAA
Motif
Other DBs
NCBI-ProteinID:
AAV90620
UniProt:
Q5NKZ0
LinkDB
All DBs
Position
complement(2052617..2053873)
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AA seq
418 aa
AA seq
DB search
MHLKDLKQKTPSELVKMAEELGIEGASTLRKQDLLFAILKVQAERGDQIMGLGTIEVLPD
GFGFLRSPEANYLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRGPKDSERYFALTKLISVN
FDNPDNVRHRVNFDNLTPLYPSEKLNLDISDPTNKDKSARVIDIVAPQGKGQRSLIVAPP
RVGKTVLLQNIARAISENHPEVFLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAQRHV
QVAEMVIEKAKRLVEHKKDVVILLDSVTRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEVVLDRKVADKRIFPAMDV
GKSGTRKEELLVDKDTLSKMWVLRRILMQMGTVDAMEFLLDKMKDSKTNEDFFASMNH
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatctaaaagatcttaaacaaaaaacgccctctgaactcgtcaaaatggccgaagaa
cttggaatcgagggggcttcgacattacgcaagcaagacctcctttttgccattctcaag
gttcaggccgaaagaggcgaccagattatgggcttggggacgatcgaggttttgcctgac
ggattcggctttttgcgcagccccgaggctaactatctcgctggtcccgatgatatctat
gtttctcccaatcaggtcagaaaatttggcctacggacgggcgataccgtagaaggcgaa
attcgggggcccaaagatagcgaacgctattttgccctgaccaagctgatttcggttaat
ttcgacaatcccgataatgtccgtcatcgcgtcaatttcgacaatctgacgccgctttat
ccttccgaaaaactcaatctcgatatcagtgatccgaccaacaaggataaatcggcacgc
gttattgatattgttgccccacagggtaaagggcagcgttccttgatcgttgcgccacca
cgggtcggtaaaacggtcttattacagaatatcgcgcgggcgatttcggaaaatcacccc
gaagttttcctgattgtgctgctgattgacgaacgtcctgaagaagtcacggatatgcag
cgttcagttaaaggggaggtaatttcctctacctttgatgaaccggcacaacgccatgtt
caggtggccgaaatggtcattgaaaaggcgaaaagactggtcgaacataaaaaagacgtg
gttattctgctggattccgtgacccgccttggccgtgcttataacacggtggtgccgtcc
tccggtaaagtcttgacggggggtgttgatgccaacgccctgcaacgcccaaaacgcttt
ttcggggcagcccgtaatatcgaagaaggcggctcgctttctatcatcgccacggccttg
atcgacaccggcagccgtatggacgaagtcatctttgaagaattcaaaggaacgggtaac
tccgaagtcgttctggatcgcaaagtcgctgacaaacggatcttcccagctatggatgtg
ggtaaatctggtacccgcaaggaagaattgctggttgataaagacacgctttccaaaatg
tgggtgctgcgtcgtatcctgatgcaaatgggaacggtggatgcgatggaattcttgctc
gacaagatgaaggattccaaaaccaatgaagatttcttcgcgtcaatgaatcactag
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