Zymomonas mobilis subsp. pomaceae ATCC 29192: Zymop_0078
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Entry
Zymop_0078 CDS
T01556
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
zmp
Zymomonas mobilis subsp. pomaceae ATCC 29192
Pathway
zmp03410
Base excision repair
zmp03430
Mismatch repair
zmp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
zmp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Zymop_0078
03430 Mismatch repair
Zymop_0078
03440 Homologous recombination
Zymop_0078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zmp03400
]
Zymop_0078
DNA repair and recombination proteins [BR:
zmp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Zymop_0078
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Zymop_0078
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Zymop_0078
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
CA109-like
Nitro_FeMo-Co
STI1-HOP_DP
Motif
Other DBs
NCBI-ProteinID:
AEI36982
UniProt:
F8ET92
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Position
complement(86206..87969)
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AA seq
587 aa
AA seq
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MANPVCGVSHSVLGQSWQWRGQRMGGIGENRLEDLVDRLLLTRGCPREGLEAYRNPTIRE
FMPDPSLLQDMDRAAERLALAIYKKESIVIFGDYDVDGATSSALMIDLLRQLGVEAAYYI
PDRLVEGYGPSVGAMQKLAQKGAQLIVTVDCGAQAYEALEEAKALGVDVLVVDHHQCQAE
LPKAYAVVNPNRLDEETTGAAYGHLAAVGVAFLLGAALLRYLRNKGYFLDRPEPRLVSML
DLVALGTVADVAALHGLNRAFVTQGLKVMAQRLRPGIVALLDVAAVSNAPTPYDLGFALG
PRINAGGRVGQSDLGVRLLTSSDTLECQKLAKELNTLNQERRDIEQAVTEAAQILCEEQR
DQPVIVVAGEGWHPGVIGIVAGRLKQKHGCPIIVIGLDEEGIGKGSGRSITGVDLGAAVL
EAKQAGLLINGGGHAMAAGLSVHKDKLEAFTSFLIERLRKAVEKAQMEKALLVDDVLAAG
GINTSLVDALEVGGPYGAGWPSPHVVTGPVRVIRYQILKEKHLSAIFVGREGKSFKGIAF
NVMDTPLAHAVISAGKEKNLWVAGKVQSNEWNGRKDVQFHIEDVSWE
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggctaatccagtctgtggcgtttctcattcagttttaggtcagtcatggcagtggcgg
ggtcaaagaatgggggggataggggaaaatcgactagaagatttagtggatcgattactt
ttaacccggggttgtccccgagaaggattagaggcttatcgtaatcctactattcgggaa
tttatgcctgacccttctttattacaggatatggatcgggcggcagaacgtctagcttta
gccatttataaaaaagaatccattgtcattttcggagattatgatgtggacggggcgact
tcttctgcccttatgattgatctgctacgtcaattaggcgttgaagcggcctattatatt
cctgatcgtcttgtagaaggctatggcccgtcggttggggctatgcagaaattagcccaa
aaaggggcgcagctcattgtaaccgttgattgtggtgcccaagcttatgaagccttggaa
gaggcaaaagcgcttggtgttgatgttttggtagtcgatcatcatcaatgtcaggcagaa
ttacccaaggcctatgcggttgttaatcctaataggcttgatgaagaaacgacaggcgct
gcttatggccatttggcagctgtgggggtggcgtttttgttgggggcggctttattaagg
tatttgcgcaataaaggttactttttagaccgtccagaaccccgtttagtttctatgtta
gatttggtcgcgctgggaacggttgccgatgttgcggcgcttcatggattgaatagagct
tttgttacacaagggctaaaagtcatggcgcaaagattgcgtcctgggatagtggctctt
ttggatgtcgcagctgtttccaatgcccctaccccttatgatttaggttttgctttaggc
cctcgcatcaatgcgggggggcgtgtcggtcaatccgatttgggcgttcgcttgctgaca
agttctgatacgctagaatgccaaaaattggccaaggaacttaatacccttaatcaggaa
agacgcgatatagaacaggccgtcacagaggccgcgcaaatattatgcgaagaacaacgt
gatcagcctgttatcgttgttgcaggggaaggatggcatcccggtgttatcggtattgtc
gcaggacgtttaaaacaaaaacacggctgtcctattatcgtcatcggcttggatgaagaa
ggtataggaaaaggttctggccgctcgattacaggggtagatttgggcgcagcggttctt
gaagccaagcaggcgggattacttattaatggcggcggccatgctatggcagcaggatta
agtgtccataaagataaattggaagcattcacctcttttctaatcgaaagattacgaaag
gcggtcgaaaaggcacaaatggaaaaagccttgctggtagatgatgttttagcggctggc
ggtatcaatacatctttggtggacgcgttagaagtgggagggccttatggggcaggttgg
ccctcgccgcatgttgttaccggaccggttcgggttatccgttatcaaattttgaaagaa
aaacacctttccgctatttttgtcggtcgcgaaggtaaaagttttaaagggattgccttt
aatgtcatggataccccccttgcccatgctgtaatatcggcaggtaaggagaaaaactta
tgggtagcgggtaaagtgcaatcaaatgaatggaatggccgcaaggatgttcagtttcat
atagaggatgtttcatgggaataa
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