Zymomonas mobilis subsp. pomaceae ATCC 29192: Zymop_0509
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Entry
Zymop_0509 CDS
T01556
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
zmp
Zymomonas mobilis subsp. pomaceae ATCC 29192
Pathway
zmp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
zmp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Zymop_0509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zmp03021
]
Zymop_0509
03400 DNA repair and recombination proteins [BR:
zmp03400
]
Zymop_0509
Enzymes [BR:
zmp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Zymop_0509
Transcription machinery [BR:
zmp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Zymop_0509
DNA repair and recombination proteins [BR:
zmp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Zymop_0509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AEI37411
UniProt:
F8EVT4
LinkDB
All DBs
Position
complement(586241..590425)
Genome browser
AA seq
1394 aa
AA seq
DB search
MNELANFANPLASPEHFDHIQISIASPERIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVIEPGLSPLKKFQLLTEDELLDAQDQYGEDAFSAG
IGAEAVKKLLEALDLETEREDLLEELKHTKSELKPKKIIKRLKVVESFIESGNRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMDLRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGGNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVITTGP
ELKLHQCGLPKKMALELFKPFIYSRLDAKGLSMTLKQAKKWVEKERKEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMAKENEPGEGMRLANMTEVHQALNV
GAVTLHSKITSRVPQVDEQGETYMKRVETTPGRMLLGETLPKNFKVPFETINRLLTKKDI
GDVIDTVYRHTGQKDTVLFADAIMSLGFKYACKAGISFGKDDMIVPAAKEALVEETRGLV
QDFEQQYQDGLITQQEKYNKVIDAWSRCGDRVAAEMMKEIQMVHKGPDGRELPVNAIYMM
AHSGARGSAAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVVVEEDCGTERALEMKAITQGGNVIASLGERILGRTLA
EDIIGTDGKTAIAVGTLLDEAHIAVIEDIGIQSVKIRSPLVCESHGGVCAACYGRDLARG
TPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSHLEAVTDGRLEYRDLRTII
DPQGKLIALSRTGELALMGADGRELASSRILLGAHLLHEDGDMVKKGDRLAEWDPFTIPV
LTESAGVVKYQDLVENQTLTEQVDEATGISQRVVVEYRAPRGKEDLRPRLTLLNGDSGET
ARYMLSPGTVISVDDGQEVLAGTVLARVSRESAKTRDITGGLPRVAELFEARKPKENAII
AKVSGRVEFGKDYKAKRKVIIRPDDGSEPIEYLVPKSKVIDAQEGDHVKRGDNLISGSPD
PHDILEVLGVEALAEYLVSEIQEVYRLQGVKINDKHIETIVRQMLLKVEITQAGDSIFLP
GEQVEKEDFEAVNAKLEAEGQEPAQAMPILLGITKASLQTRSFISAASFQETTRVLTEAA
VQGKIDTLSGLKENVIVGRLIPAGTGAAMKRMRVTANSRDAALRAAQKTVDFGQPSIGFE
VDVTETPETTDAAE
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaattagctaattttgccaatccgcttgctagtccggagcattttgatcacatc
cagatcagcatcgcttctcctgagcggatccgttcatggtcttatggcgagataaaaaag
cctgaaacgatcaattaccgtacctttaaaccggaacgggatggtcttttctgcgcacgt
atctttggcccgattaaagattacgaatgcttatgcggcaagtataagcgcatgaaatat
aaaggcatcgtctgcgaaaaatgcggcgttgaagtcaccgtttccaaggtgcgccgtgag
cggatgggtcatattgaactagcagcgccggttgcgcatatctggttcctaaaatcctta
ccaagccgtatcggtcttctgcttgatatgcagttgaagcaactcgaacgggtcctttat
ttcgaaagctatatcgttattgagccgggtttgagcccgctcaaaaaattccagcttttg
actgaagatgaactgcttgatgcgcaggatcagtatggggaagatgctttctcggcgggt
atcggtgctgaagcagttaagaagcttttagaagcccttgatcttgaaaccgagcgcgaa
gatcttcttgaagagctgaagcatactaaatcagagctgaagccgaagaagattatcaaa
cgtttgaaggttgtcgaaagcttcatcgaatctggtaaccgccctgaatggatgattctg
gaagttattccggttattccaccagaattacgtccgttggtgccgttggatggagggcgt
tttgcgacctctgaccttaatgatctttatcgtcgggttattaaccgtaacaaccgttta
aagcggctgatggatctccgtgcaccggatatcattgtccgcaatgaaaaacggatgttg
caagaagcggtcgatgccctgtttgataatggacgtcgcggtcgcacgattacagggggt
aacaaacgtccgctgaaatccttatcagatatgctgaaaggtaagcaggggcgtttccgt
cagaatctgttgggtaaacgcgttgactattcaggtcgttctgtcatcacgacggggccg
gagctgaaattacatcagtgcggtctgcctaagaaaatggcgctcgaactctttaagccc
ttcatctattcgcggcttgatgcgaaaggtctttcaatgaccttgaagcaagctaagaaa
tgggttgaaaaagagcggaaagaagtttgggatattctggaagaggttatccgcgaacat
cccgtgatgttaaaccgtgcaccaaccttgcatcgcttgggtattcaggcatttgaaccc
gttttgatcgaaggtaaagctatccagcttcatcctctggtctgctcggcctttaatgct
gactttgatggtgatcagatggccgttcatgtgccactatcccttgaagcacagcttgaa
gcgcgcgtgctaatgatgtctaccaataatattctgtcaccggccaatggtaagcctatt
attgtgccgtcgcaggatatggttctcggtatttattatctttccatggcgaaagaaaat
gaaccgggtgaaggtatgcgtcttgccaatatgacggaagtgcatcaggccttaaatgtc
ggtgcggttacgttgcacagcaaaatcaccagccgtgtgccacaggtggacgagcagggt
gagacctacatgaagcgggttgaaactacgccgggtcgtatgctgttgggtgaaaccctg
ccgaaaaacttcaaggttccttttgaaacgatcaaccgtttgttgacgaaaaaagatatc
ggtgatgtcatcgataccgtttaccgtcatacgggtcagaaggatacggtattgtttgcc
gatgcgatcatgtcgctaggcttcaaatacgcttgtaaggcaggcatttccttcggtaag
gacgatatgatcgttcctgcggcgaaagaagccctggttgaagaaacccgtggtctggtt
caagattttgaacaacagtatcaggatggtttgatcacgcagcaggaaaaatacaacaag
gtcatcgatgcatggtcgcgttgtggtgatcgtgttgcggccgagatgatgaaagaaatc
cagatggttcataaaggaccagatggacgggaattgccggttaacgctatttacatgatg
gcgcattccggtgcccgtggttctgctgcccagattaaacagctggctggtatgcgcggt
ttgatggcgaaaccatcaggtgaaatcatcgaaacgccgatcatctcgaacttcaaggaa
ggtttgaccgttcttgaatactttaactctacccatggtgctcgaaagggtcttgcggat
accgcattgaagacggctaactctggttacttgacccgtcgtcttgtggacgtcagtcag
gattgtgtggtcgttgaagaggattgcggtaccgaacgcgcgcttgagatgaaggccatt
acacagggcggtaatgttattgcctctttgggtgaacgtatccttggacggactttagcg
gaagatattatcggtaccgacggtaaaacagcgatcgccgtaggcacgctgctcgatgaa
gcgcatatcgctgttatcgaagatattggtatccagtctgtaaaaatccgtagtccgttg
gtctgtgaatcccatggcggggtttgtgccgcttgttatggtcgtgatcttgcgcgtggt
acgccggttaatatcggtgaagctgtcggcgttattgcggcacagtcaatcggtgaaccg
ggtactcagttgacgatgcgtaccttccatattggtggtgctgctcagttaaatgaacag
tctcatcttgaagctgtcacggatggtcgtctggaatatcgtgatcttcgtaccattatt
gaccctcagggtaagctgattgcgcttagccgtacgggtgaattggcattgatgggtgct
gacggtcgtgaacttgcctcaagccgtatccttctgggtgcccatttgctgcatgaagat
ggtgatatggtgaagaagggcgatcgactggccgaatgggatcctttcaccattccagtg
ctgacggaaagtgcgggcgtcgtcaaatatcaggatttggtagagaatcagaccctgaca
gaacaggtcgacgaagcaacgggtatttctcaacgcgtggtagtggaatatcgcgcacca
cggggtaaagaagaccttcgcccacgtttaactttgttaaatggtgattctggcgaaact
gcccgttacatgctgtcaccgggtacggttatttcggtcgatgacggacaagaagtcttg
gccggtaccgttcttgcgcgtgtcagccgtgaatcggctaaaacgcgtgatattaccggt
ggtctgccacgtgtggccgagctgttcgaagcccggaaaccaaaagaaaatgcgatcatt
gcgaaagtgtctggtcgcgtcgaatttggtaaagattataaagccaaacggaaagttatc
atccgtccagatgatggttcagagccaatcgaatatctggtgccgaaatccaaggttatt
gatgctcaggaaggtgaccacgtcaaacggggtgacaatctgatcagtggtagccctgat
ccgcatgatattctggaagttctgggtgttgaagccttggctgaatatcttgtttcggaa
attcaggaagtgtaccgtctgcaaggtgtgaaaattaacgataagcacattgaaacgatc
gttcgtcagatgttgcttaaagttgaaattacgcaggctggagatagtatcttcttaccg
ggtgaacaggtcgaaaaagaagacttcgaggcggttaatgccaagctggaagccgaaggt
caggaaccagcgcaggctatgcctattctgttaggtatcactaaagcttcgcttcagacc
cgcagctttatttctgccgcctccttccaggaaacgacccgcgttcttaccgaggccgct
gtccaaggtaagattgataccttaagcggtcttaaagaaaacgtcatcgtcggacgtctg
atcccggctggtacgggtgctgccatgaagcggatgcgtgtaacggccaatagtcgtgat
gcggctctacgggcagcccaaaagacggttgattttggtcaaccctccatcggttttgaa
gtcgatgtgacggaaacgcctgaaacaacggatgctgctgaataa
DBGET
integrated database retrieval system
