Zymomonas mobilis subsp. pomaceae ATCC 29192: Zymop_1469
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Entry
Zymop_1469 CDS
T01556
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
zmp
Zymomonas mobilis subsp. pomaceae ATCC 29192
Pathway
zmp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zmp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Zymop_1469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zmp03400
]
Zymop_1469
Enzymes [BR:
zmp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Zymop_1469
DNA repair and recombination proteins [BR:
zmp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Zymop_1469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
UB2H
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEI38359
UniProt:
F8EVM2
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All DBs
Position
complement(1703556..1707059)
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AA seq
1167 aa
AA seq
DB search
MFLDLSQILKAAQPLTLAGVENGFQPLLLGDIARAFVRKGKGGRLFYIAPDDQAARAIIE
TAPYFTPELETLFFPAWDCLPYDRASPSLSVSANRIATLYDLQRCPKTAQLVVTTIEAAT
QRVLTPFRLRQLSQYLAPNARIDRDQLVTLLRAHGYQQSDTVSHAGDYAIRGGLIDLWPS
GLPYALRLDFFGDEIESLRQFDPVDQRSISNIESFTLLPASEALLDPDNIKRFRSGYRDL
FGATATTDPLYQAISEGRRLSGMEHWLPLFEEKLVTVFDHLSTDDAIFYDQGCIKAAEQR
FEAILDYYGHRKDHQSQDAGSYRPLKPDMLYLNRENWLQNLESWPAHQITAFHHPPAPHV
IDLEIAAPRDFAPERSQGGNIYEAVVDYIGALNNQNKRVILASYSKGSRERLAGLLSDHG
LKRVIEADTWQEALGAADISRSKISGAALMVLPIDHGFLTTDIALLSEQDILGDRLVRRA
KRRKSADAFMAELASLTPGDLVVHSDHGIGCYEGLTSIPVGSAPHDCVALSYQGGDKLYV
PVENIDTLSRYGNAHENTVLDKLGGVAWQTRKSKMKERIRAIAGQLMATAAQRVLRSGPV
ALADPASYPLFVDRFPYQETDDQERAISDVIEDLAKGKPMDRLICGDVGFGKTEVALRAA
FIAAMAGFQVVLVCPTTLLARQHYSNFIERFEGFPLKIGRLSRLVPAKEAKICRQELAEG
TMDIVIGTHAVLSKTIQFKRLGLVIVDEEQHFGVVHKERLKALKNDVHQLTLTATPIPRT
LQMAMSGLRELSVIQTPPIDRLAVRSYVMPWDPVAIREALLREHYRGGQSFIVVPRISDL
VDLEKFLTDQVPEVRFVIAHGQMAASEVEERMAAFYDKRFDVLLSTTIVESGLDIPSANT
MIVYRADRFGLSQLYQIRGRVGRSKTRAYAYMTTPINHAISETAEKRLHILSTLDSLGAG
FQLASHDLDIRGAGNLLGDEQSGHIKEVGFELYQSMLEDAILEAKSGDLTAAKEQDEFSP
QITIDAPILIPESYVPDLNLRMALYRRMSDIKNREDIDAFAAELIDRFGSLPQETKNLMA
IIEIKTNCRQAHIIRLDGGPRGALISFNNDNFPNVTGLLNYIQKLKGTAKLRPDQKLVIQ
RNWPDQKSRLNGLVQLSRGLAKVALAG
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgtttttagaccttagtcagattttaaaagcggcgcagcccctgactctggcaggcgta
gaaaatggcttccagcctttattgctaggcgatattgcccgtgccttcgttcgcaaagga
aaagggggccgattattttatatagcccctgatgatcaggctgcgcgtgcaattattgag
acagccccttatttcacgcctgagttagaaaccttattttttccggcatgggattgtctc
ccttatgatcgggcatcgccgtcactctccgtttcagcaaatcgtattgctacactttat
gaccttcagaggtgccctaaaacagcgcaactagtcgtgacgacaattgaggccgcgaca
caacgggttttaacgccgttccggttgcgtcagctgagccagtatttagcccccaatgcg
cgtattgatcgagatcaactggtcactttattacgggcccatggctatcaacaaagcgat
acggttagccatgccggtgattatgccattcggggcggcctgatcgatttatggccatca
ggcttgccctatgctttgcggcttgattttttcggtgatgaaattgaaagtctacgccaa
tttgatccggtagaccaacgtagcatcagcaatattgaaagttttaccttattacctgcc
tcggaagcgttgttagatcccgacaatatcaaacgttttcgaagtggttatcgcgattta
ttcggcgcaacagcgacgactgatcccctttatcaggctatatcagaaggccgccgcctg
tccggtatggagcattggttacccctgtttgaagaaaaattggtaaccgtatttgatcat
ctctccaccgatgatgccattttttatgatcagggttgcatcaaggccgccgaacaacgt
tttgaagctatccttgattattacggccatcgcaaagatcatcaaagtcaggatgccgga
agttaccgaccgttaaaaccggatatgctttatttgaatcgggaaaactggctgcaaaat
ctggaaagctggccagcgcatcagattaccgcttttcatcatccccctgccccgcatgtt
attgatctggaaattgccgccccgcgtgatttcgcacctgaacgtagtcaaggcggtaat
atttatgaagcggtcgtggattatattggtgcactcaataatcagaacaagcgcgttatt
ctggcaagctattctaaaggctcacgcgaaagattagcggggcttttatccgatcatggt
ctgaaacgcgttatagaagcagacacatggcaagaagcactgggtgccgccgatattagt
cgatcaaagatttctggtgccgctttgatggtgttaccgattgatcatggttttcttaca
acggacatcgcccttttaagcgaacaggatattttaggggatcgtctggtcagacgcgcc
aaaaggagaaaatcagccgatgctttcatggctgaactggcgagtctgacccccggtgat
ctggtcgttcacagcgatcatggaataggttgttatgaagggttaacgtccatccctgtc
ggcagtgcgccgcatgactgtgttgcgttaagctatcagggcggcgataaactttatgtg
ccggttgaaaatattgatacgctcagtcggtatggcaatgcccatgaaaataccgttctt
gataaattaggcggcgtcgcatggcagacccgcaaatcaaaaatgaaagagcgcatccgc
gctattgctggtcagttaatggcaacagccgcgcaaagagttctacgctctgggccggtt
gccttggccgatccagctagttacccgctttttgttgatcgtttcccctatcaagaaaca
gatgatcaagaacgggcgatcagcgacgttatcgaagatctggccaagggtaaaccgatg
gatcgtctgatctgtggcgatgtcggttttggtaaaacagaggtggccttacgggccgct
tttatagccgcaatggctggttttcaggttgttttggtatgcccgacgacattgctagcc
cgtcagcactacagcaattttatagaacgttttgaaggttttcctttaaaaattggccgt
ctttcaaggctggtacccgctaaagaagcaaaaatttgtcgtcaggaattggccgaaggg
acgatggatatagttattggcacccatgcagttttatcaaaaactatccaatttaaacga
ttagggttggtcatcgtcgatgaggaacagcatttcggcgttgtccacaaagaaagattg
aaagccttaaaaaatgatgttcatcaattaaccctgaccgcaacacctattccccgcact
ttacagatggcaatgtctggtttgcgtgaattatcggttatccagacgccgcctatcgat
agactggctgttcgtagttatgtcatgccttgggaccccgttgctattcgggaagccttg
ctgcgtgaacattatcggggcggacaaagcttcattgtggtgccgcgtatttctgacttg
gttgatcttgaaaaattcttgaccgatcaagtgccagaagtccgttttgttatagcccat
ggacaaatggcggcatcagaagttgaagaacgcatggccgccttttacgacaaacgtttt
gatgtattactgtccaccacaattgttgaatcgggtcttgatattccaagtgctaatacg
atgattgtctatcgtgccgatcgctttggcttgtcacagctttatcaaattagaggacgc
gtagggcggtccaaaacccgtgcttatgcgtatatgacgacccccatcaatcacgctatc
agtgaaacggctgaaaaaagattgcatattctgtcaaccttggattctttgggggcaggt
ttccaattagccagtcatgatcttgatattcgtggtgccggtaatcttttaggggatgaa
caatccggacatatcaaggaagtaggctttgagctttatcaatccatgctggaagatgcg
attttagaagcaaaatcaggggatcttacagccgcaaaagaacaggatgaattttcaccg
caaataacaattgatgccccgattttaattcctgaaagttatgtccccgatctcaattta
cgtatggcgctttatcgccggatgagtgacattaaaaatcgggaagatattgatgcgttt
gcggctgaattgattgatcgttttggttctttgcctcaggaaacgaaaaatctgatggct
attatcgaaatcaaaacgaattgtcggcaagcgcatattatccgcttagatggcggcccc
cgaggtgcgttaatctcttttaacaacgataattttccgaatgtaaccggattactgaat
tacattcagaaattaaaaggcaccgctaaattaagaccagatcaaaaactggttatccag
cgcaactggcctgaccaaaaatcaagattaaacggattagtacaactttctcgaggatta
gcgaaagtcgccttggccggataa
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