Zymomonas mobilis subsp. pomaceae ATCC 29192: Zymop_1649
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Entry
Zymop_1649 CDS
T01556
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
zmp
Zymomonas mobilis subsp. pomaceae ATCC 29192
Pathway
zmp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zmp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Zymop_1649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zmp03019
]
Zymop_1649
Enzymes [BR:
zmp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Zymop_1649
Messenger RNA biogenesis [BR:
zmp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Zymop_1649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
HEAT_DAAF5
AAA_19
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AEI38537
UniProt:
F8EWC7
LinkDB
All DBs
Position
complement(1929416..1930762)
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AA seq
448 aa
AA seq
DB search
MTETPVSFKTLGLDSSLIQALDALGYTTPTPIQAQAIPHLLEGKDLCGIAQTGTGKTAAF
ALPSIHYLTTNPIARPSRGCRMLILSPTRELASQIARACNDYTRHLRLTVNSVFGGVPIG
RQIRMLERGTDILVATPGRLLDLIDQRALVLKDVEVFVLDEADQMLDLGFIHALRRIDKL
LPKQRQTLFFSATMPKSIQELSSQFLSDPVTVSVAPQSSTAERVEQFGVFVNQQEKQALL
TITLKSTPGLDRALVFTRTKHGADRVVRHLEAAGIPAAAIHGNKSQPQRERALNAFRNGR
LKILVATDIAARGIDVPGVSHVFNFELPNVAEQYVHRIGRTARAGRDGQAISFVANDERT
YLRSIERLTRVKLQILPLPENFVVEKETLPHPAPMRPERNEGRGGRGGRGGYGAGAPKSG
FNNNNSNGNRPRRPRRPQIKGVRAVGRG
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgacggaaacaccggtttcgttcaaaaccttgggtctcgactcgtctcttattcaggcc
ttggatgcgttaggctatacaacgccaacccctattcaggcacaagctattccgcatctt
ttagaaggtaaagacctttgcggcattgcccagacaggtacgggtaaaacggccgccttt
gcgcttccttctattcattatcttaccactaatccgatagcacgcccttcacggggttgc
cggatgcttattttatcaccaacccgtgaattggccagccagattgcacgggcttgcaat
gactatacacgtcatttacgtttgaccgttaattctgtttttggtggtgtacccattggt
cgccaaatccgtatgctggaacggggtacggatattttggttgcaacgccaggacggctt
ttagatttgattgatcagcgcgctttagtgctgaaagacgttgaagttttcgttcttgat
gaagctgaccagatgcttgatcttggctttattcatgcattgcgtcggattgacaaatta
ttgccgaaacagcgtcagacgttgttcttctctgcaacaatgcctaagtccattcaggaa
ttaagcagccagttcctgtcggatccggtcaccgtttctgtagcgcctcagtcttcaacg
gcagaacgcgtagaacaattcggtgtttttgttaatcagcaggaaaaacaagcgctttta
acgattacgcttaaaagtacgccgggtcttgatcgggcattggttttcacgcggacgaaa
catggtgccgatcgggttgttcgccatttggaagccgccggtattcctgccgccgctatc
catggtaacaaaagccagccacaacgcgaacgggctttgaacgctttccgtaatggccgc
ttaaaaattctggttgcaaccgatatcgccgcacgcgggattgatgttccgggtgtcagc
catgtcttcaactttgaattgccgaatgtcgctgaacaatatgttcatcgtattggacgt
acagcgcgtgcgggtcgtgatggacaggcgatcagctttgttgcgaatgatgaacgtacc
tatcttcgttccattgaacgcttgacccgcgtaaaacttcagattttaccgttgcctgaa
aattttgtggtagaaaaagaaacgctgcctcatccggcaccgatgcgtcctgaacgcaat
gaaggtcgtggcggtcgtggcggtcgcggtggctatggtgcaggggcaccgaaatcaggc
tttaataacaataatagtaatggtaatcgcccacgccgtccgcgtcgtcctcagattaaa
ggcgttcgtgctgttggtcgcggttaa
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