Zootermopsis nevadensis (dampwood termite): 110832246
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Entry
110832246 CDS
T05136
Name
(RefSeq) uncharacterized protein LOC110832246
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
zne
Zootermopsis nevadensis (dampwood termite)
Pathway
zne03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zne00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110832246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zne03021
]
110832246
03019 Messenger RNA biogenesis [BR:
zne03019
]
110832246
Transcription machinery [BR:
zne03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110832246
Messenger RNA biogenesis [BR:
zne03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110832246
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
110832246
NCBI-ProteinID:
XP_021924760
LinkDB
All DBs
Position
Unknown
AA seq
2258 aa
AA seq
DB search
MVTETFENMTSTAKMSKEAKEVAEEYASSLSDLTVNSKPLINMLTMLADDNIMHAPIIVQ
AVEKHLQKVRAEMKLPVLYLIDSIVKNVGDTYTSLFTQNIVSTFCSVFEKVDEKTRAQMF
KLRQTWNEVFPPKKLYAVDVRVNSIDPAWPITAVPPTIHVNPKFFRQQAGAVPGPQPSST
AASAAPTTPTAPTTPTAPAVLPVVTEDPHTINEAKMREQLLKKQKELLELQQKKLELELL
QTKARLEEQQKQLERQTGNLKADNVQHLVMPGMKVAGQDAVKLLVTHKPTESPLVATKSQ
TTVPDPAPVVMKTAVNYSQSSVMVAVTAPEAVNTTARGSNGALGSSRAKTELVTTAAATG
LKTSFATSSLSTGSRPVPAPAGTTVGPNVRSRDPRLASRQLQSSVVSANNTAQTQDEEMQ
EPDSVFEPVKLETAKPKPQITINLGCANKGTVNKETRGISKKDPRLLSNKVHGLSNSNVK
GRTSSTTSSGIGGKGGGKLLGRVPSPSFSLSRPSISGGGKTSTSPSSSSSSQRKIQSKGG
HNGSTKPPRNKDLPKIIKIDLTDSPPPKAGGTKDEIVRNEENTETSIKSSSPSSKTEHHK
KKSSPLGTSRSERKKGSGKAGSESADMGGNSSSSSNKRERPKSPLGGEKGFSRDHDRSSS
SKYDMFIESEGDSPSPPPPPIISTDGKKKEESSTSKGSVFKDLKLPKGRNYVRRNLPAKS
RSPEIPPVATTGDVDLRLGAPPEKHPRLNMFQPDTNASLASTEEDIKSKLTDFQSSLHGY
WVSLFWFGLFLWEFCTVLWQQFISVFHFYNFITHFLICVSNLLWKSEVCRIEFRVRYFDH
IRQLSNGNLLIFTRYIWIGCGGQEHWPSRYPDLNVMVPEPLVEAGNKDVDLRQLSGSNCK
KRSSTDRSEQPPMKKTKAEVFDELFGNEDVDLRQLPSAVPVTQTLPPSPPPPPVISLPSP
VPTSASSQDSSANTTSSPKQVSPERERNEDHVNERKTVNEDDGKENGESELKSRGWAKYK
EKRPDTYKSPLRPLGHYGHDALDLPELRNSSPGSGSPLRERDMLYGTPRDRGMSHFHRST
GKFDKLGRPLLYHRLPDDPGERRRSLCTMVGEDTDMRPHIMDDANLNDINNININNININ
MIIQEADEQLKNGTISFSHYNTVLKQVIQLNEVQKLREAQRIGVCEPGHLSPVSADEDSQ
GDRSADFSPCSDSSEVGHKPSGSSVDARFGDIDERFPAIHKHRNPTTTSVPSPPEPSMPG
KFQPGPSQWNDVHPRLGSGRWEPAPSPWIRGALGSVSVPITQGHLGTHMRMLHPGPNQGQ
SSPFQRSSGPEFQQISSFGGINRWRPPQFQSRAPFEGDVDRFESRFSGRSDNRFRGSAPS
TLQQQQSRANDELPPADPLILDLIAQDTMRTINIDGVPREIRFYGDTAVVMLAWDDPREI
GFQGGSRRVIFDDRETVLCSFNDTYRECIIDGTTHRIRLGAPTRELYVDGKWYECFFGGS
PVTIDIGGKMHVVKLEGPPPQVKIGFVKRTDLVAGKINLIINAKNMVPVFLDAKPQRFDI
EGKPHVLRFVEALSTVLINGQPIKVEFGGLPKPIVVRGKKHFIRFTVLPRGIRPGYISIV
NMEGGRLQSPPQLKNENNDSIGFGEDSNDTSSKFTQGHDPVLPAIGSTASSSGRNIRGHR
RPFGADRDRDSPHENEHTRNSPVQFLGDNAVMGPAVPIQQQRHRPQGQLPLEMLTSLMPT
VMAPASGFSYQVEQDSEDGQPRVQEISSQVPEPGVQESSLPSTGASSIPFLPTEINVVEL
FHKLVATGIVPQAEKADAESKKEEEVKSIKPVDFKQPETLKVRQPGVVALLYSGIQCSSC
GVRFPPEQTMKYSQHLDWHFRQNRRDRDNVRKAQSRKWYYDVSDWIQFEEIEDLEERAQS
WFETQQAAEGDEKEVQEVPSVCAGENPEDTFCAVCHDKFEQFYNEEREEWHLRAALRVDG
KTYHPLCYDDYKASLEASVEEPAVNEEAKSSEVDMKADEKKTDEKKEEENNAVAMDTIKK
EEPRDSEEVATEEEKTDDVNKVDDIESKLEEVKLEPPVDEYPIKEDIQETMDTAEIVEPE
SEVKAEPEQIETEDAIGEDDVQPIAPTTDTTHTAVACSIDGNVKFEDSPKISSGPISGKI
KINITKSFASIAAKEPQSEGAVETMVTDQSPDNDDPVSTEANRDSSEEAIGEENVDSQEP
PPPGVEPVQLKPRLVGRKLTDLPPVMKGTELSGLCSIM
NT seq
6777 nt
NT seq
+upstream
nt +downstream
nt
atggttactgaaaccttcgagaatatgacatctacggcaaaaatgtccaaggaggcgaaa
gaggtagccgaagaatatgcgtcctccttatcggatctcaccgtgaacagcaaaccacta
atcaacatgcttacgatgctcgctgatgataatataatgcatgcaccaataatcgtccag
gcagtggaaaaacatcttcaaaaggtgcgggcggagatgaagctgcctgtgttgtacctc
atcgattctatcgtgaagaatgttggggatacatacacatcactcttcactcagaacatc
gtttcaacattctgcagtgtttttgagaaggtggacgaaaaaactcgggctcagatgttt
aagttgcgtcaaacatggaatgaggtgtttcctccaaagaagttgtatgctgtggatgta
cgtgtgaattcaattgatccagcatggccgatcacagctgtacctcctaccatacatgtg
aatccaaagttttttcggcaacaagccggtgctgttcctggtcctcaaccgtcttctact
gcagcttcggctgcgccaactacaccgactgcaccaactacaccgactgcaccggccgta
ctgcccgtggtcacagaagatccacacacaattaatgaagcgaaaatgagggagcagttg
ctgaaaaagcagaaggagcttcttgaacttcaacagaaaaagttggagcttgaattgctc
cagacaaaggcaagattagaagaacaacagaaacagttagaacggcagactggtaattta
aaggctgacaatgttcagcatctcgtaatgccaggaatgaaagttgctggccaggatgct
gtcaagctacttgtgactcataaaccaacagaatctccattggttgccacaaaatctcaa
acaacagtgcctgatcctgccccagttgtcatgaagacagctgtgaattatagtcagagt
tctgtaatggttgcagtaactgctcctgaagcagttaatactactgcaaggggtagtaat
ggtgctttaggaagtagcagggcgaagactgagctggtaacaacagcagcagcaactgga
ttgaagacttcgtttgcaacatcatcattaagcacgggctctcgtccagttccagcacca
gcaggaactactgtcggtcctaatgtgcgatcaagagatccacgactggcttctcggcag
ttgcagtctagtgtagtttctgcaaataatacagctcagacacaagatgaggaaatgcag
gaacctgattctgtttttgaaccagttaaactagagactgccaaacccaaacctcagatc
acaatcaatcttggttgtgccaataaaggtactgtgaataaagaaactcgaggaattagt
aagaaagaccctcgtttgctgagtaataaggtacatggtttaagtaatagtaatgtcaaa
ggacggacatcatctaccactagtagtgggattggtggtaaggggggtggcaagttgttg
ggaagagtcccttctccttctttttccttgtcccgccctagtattagtggtggtggtaag
acttctacttccccatcctcttcctcatcatcacaacgcaaaatacaaagtaaaggtggc
cataatggtagcacaaagccaccacgtaacaaagaccttccgaagataataaagattgac
cttacggatagtcctccacccaaagcaggaggtacaaaggatgagattgttagaaatgaa
gagaatactgaaactagtatcaaaagtagttccccttcctctaagacagaacatcataaa
aagaaatcctctcctcttggtacaagcagatctgagaggaagaaagggtcaggtaaagct
ggcagtgaatctgcagatatgggtgggaactctagtagcagtagtaataagcgagaacga
ccaaagagtcctttgggaggggagaaaggattcagtcgcgatcatgatcgctcatcctcc
tctaagtacgacatgttcattgagtcagagggtgattctccatcaccgccacctcctcca
atcatcagtacagatggtaagaagaaagaagaatcttccacatctaagggcagcgtgttc
aaagatctgaagctaccaaaaggtcgtaactatgtgagaagaaacctgcctgctaaatct
cgcagcccagaaattcctcctgtggcaaccactggagatgtggacttgcgcttgggtgct
cctccagagaagcatccacgtcttaacatgttccagccagatacaaatgcatccttggct
tccactgaagaggatatcaaaagtaagctaacagattttcagtcttcactacatggttat
tgggtttctctgttttggtttgggttgtttctttgggaattttgcactgtactatggcaa
cagtttatctctgtatttcatttttataattttatcacacacttcttgatatgcgtgagt
aatcttttatggaagtctgaagtttgtcgcattgaatttagagtaagatattttgaccat
atcagacaactatctaatggtaatttgttgatcttcacacgctatatatggattggttgt
ggtggtcaagaacattggccatcaagatatccagacctgaacgttatggttccagaacca
cttgtagaagctgggaataaggatgtggatttgcgtcaactgtctggatcaaactgtaag
aaacgttcatccacggacagatcagaacagccaccaatgaagaaaactaaggcagaagtg
tttgatgagttgtttggaaatgaagatgtggatctccgacagttgccttctgctgtacca
gttactcagactttacctccatcaccaccaccacctccagtaatatctctgccttcacct
gtgccaacatcagcatcatctcaagacagttcagcaaacacaacttcatctccaaaacaa
gtttcacctgaaagagaacggaatgaagaccatgtcaatgaaaggaaaactgttaatgaa
gatgatggaaaagaaaatggtgaaagtgaattgaaatctcgaggttgggctaaatacaag
gaaaaaagaccggacacatataagtctccgttgcggcctctgggtcattacggtcatgat
gctcttgatttaccagaattacgcaattcatctccagggtctggttcaccactgagagaa
agggacatgctatatggaactccaagggacagaggaatgtcacattttcacaggagtact
ggaaagtttgataaacttgggcgaccacttctttatcacagattaccagatgacccagga
gagaggcgtcggtctctttgcaccatggttggagaagatactgatatgaggccacacata
atggatgatgctaacttaaatgatattaataatattaatatcaataatatcaatattaat
atgattatccaggaagcagatgaacaactcaagaatgggacaatatcattttctcattat
aacacagtcttgaagcaggtgattcagttaaatgaagtacagaagttaagagaagctcag
agaattggcgtgtgtgaacctggtcacttatcacctgtcagtgctgatgaagacagtcaa
ggtgacaggagtgcggacttcagtccttgtagcgattccagtgaagttggccacaagcca
agtggttcatctgtagatgctaggttcggagatattgatgagcgattcccagcaattcat
aagcatcggaatcctactacaacttcagtgccatctcctccagaaccatctatgccaggc
aaatttcaacctggaccatctcagtggaatgatgtacaccctcgcttggggtcgggtcgt
tgggaaccggcaccaagtccttggatacgtggtgcgcttggttcagtatcagtacctata
actcaaggtcacttgggcacgcacatgcgtatgcttcatccaggtccaaatcaaggacag
agtagtccctttcaacgatcctcagggccagaatttcaacagatcagcagttttggtgga
attaaccgttggagacctccgcagttccagagtcgtgcaccgtttgaaggagacgtagac
aggtttgagtcacgttttagtggccgttcagataacagatttcggggatctgctccatct
acgttgcaacagcaacagtcacgtgcaaatgatgaactcccaccagcagaccccttgatt
cttgatctcatagcacaggatactatgaggactattaatatagatggtgtaccaagggaa
attcgtttttacggtgacacggctgtggtgatgctagcatgggatgacccaagagaaatt
ggtttccagggtggttcccgaagggtcatatttgatgacagagagactgtactctgttca
ttcaatgacacatacagagagtgcattatagatggaactacccacaggatacgacttggt
gcaccaactcgtgaactttatgttgatggtaagtggtacgagtgtttctttggaggttct
ccagtcacaattgatatcggcggcaagatgcatgttgtgaagttggagggtccaccgcct
caggttaaaattggctttgtgaagaggacagatctggtagctggcaagataaatttaatc
atcaatgccaagaatatggttcctgtgttcttagatgccaaaccacagaggtttgacatt
gagggcaaaccccatgtacttcgttttgttgaagctttatctactgtgctaattaatgga
cagcctatcaaagttgaatttggtggacttccgaaacccatcgttgttcgtggcaaaaag
catttcatacgtttcacagtgttaccacgtggcatcaggcctggatacataagcattgtt
aacatggaaggtggtcgattacagtcgcctcctcaattgaagaatgaaaataatgactcc
ataggctttggtgaagattccaatgatacatcaagcaaattcactcagggacatgatcca
gtgctaccagctataggaagtactgctagttcaagtgggcgaaatattagaggccacaga
aggccatttggcgcagatagggatcgcgattcaccccatgagaatgaacatacaaggaac
tcaccagtgcaattccttggggataacgctgtgatgggaccagctgttcctattcaacaa
caaagacatagaccacaaggacagttaccattggaaatgttgacaagcttgatgccaact
gtgatggcaccagcttcagggttcagctaccaagtggagcaagactctgaggatggtcag
ccaagggtccaggaaatatcttctcaggttccagaacctggtgttcaagaatcgtcgtta
cctagcactggagctagcagcatcccttttcttccaactgagataaatgtggttgagctt
ttccacaagcttgtggcaacaggaattgttccacaggctgaaaaagcagatgcagagagt
aagaaagaggaagaagtgaagtccataaaacctgtggacttcaagcagcctgaaacattg
aaagtacgtcagcctggcgtagtggcgctcctgtattctggcattcagtgtagttcgtgt
ggtgttcgtttccctcccgaacaaactatgaagtatagccagcatttggattggcatttc
cgtcagaacagacgtgacagagacaatgttcgcaaggctcaaagtagaaaatggtattac
gatgtctccgattggattcaatttgaagaaattgaagacttggaggaaagagctcagagc
tggtttgaaacacagcaggctgctgaaggagacgagaaggaggttcaagaagttcctagt
gtttgtgcaggagagaatcctgaagacacattttgtgccgtgtgccatgacaaatttgaa
cagttttataatgaagaaagggaagagtggcaccttcgtgcagcgctgcgagtcgatggg
aaaacctatcacccactttgctatgatgactacaaggcttcacttgaggcatcagtagaa
gaaccagctgtcaatgaagaagcaaaaagtagtgaagtagacatgaaggctgatgaaaag
aaaacagatgagaagaaagaggaagaaaataatgcagtggcaatggatacaattaagaaa
gaagaaccaagagacagtgaagaagttgcaactgaagaagaaaaaactgatgatgttaat
aaggtagatgatattgaaagcaagttggaggaggtgaaacttgaacctccagtggatgaa
tacccaataaaagaggacattcaggaaactatggatactgcagaaattgtagaaccggaa
agcgaggtaaaggccgagccagagcaaattgaaactgaggatgcaattggggaggatgat
gtacagcctatcgctcccaccactgacacaacacacactgccgtagcatgttccattgat
ggtaatgttaaatttgaggactccccaaaaatttcatctggtcctatttcaggtaagatt
aagataaacatcacaaaatcctttgcttccatagcagcaaaggaaccccaaagtgaagga
gcggtagaaactatggtaacagatcaaagtcctgataatgatgatccagtatctactgaa
gccaatagagactccagtgaagaagcaataggtgaggaaaatgtggattctcaggaacct
cctccccctggtgttgaacctgtacagttaaaacctcgattagtgggaagaaaacttaca
gacctacccccggtgatgaaaggaacagaactctctggattatgttctataatgtga
DBGET
integrated database retrieval system
