Zootermopsis nevadensis (dampwood termite): 110833829
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Entry
110833829 CDS
T05136
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
zne
Zootermopsis nevadensis (dampwood termite)
Pathway
zne03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zne00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110833829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zne03019
]
110833829
03041 Spliceosome [BR:
zne03041
]
110833829
Messenger RNA biogenesis [BR:
zne03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110833829
Spliceosome [BR:
zne03041
]
Complex B
Other components
Prp19-related factors
110833829
Complex C
110833829
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
HAT_PRP39_N
Suf
TPR_2
TPR_8
ARM_TT21_C
RPN7
TPR_12
PPR
Motif
Other DBs
NCBI-GeneID:
110833829
NCBI-ProteinID:
XP_021928019
LinkDB
All DBs
Position
Unknown
AA seq
861 aa
AA seq
DB search
MASYGEVVDIELVFNEDDLPYEEEILRNPFSVKHWQRYIEHKKGSPKHTVNVIFERALKE
LPGSYKLWYSYLRLRRRQTKGRCITDPSYEDINNAFERSLVFMHKMPRIWLDYSQFLMDQ
CRITRTRQVFDRALRALXXXXXXXXXXLKFLKMYDIPETAVRVFRRYLKLYPEDAEDYIE
YLISIGRLDEAAVKLAYIVNKEDFVSKHGKSNHQLWNELCELISKNPDKVRSLNVDAIIR
GGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAVXXXXXXXQVFDACAQFEELSLS
KRMEEAAGNLNPTEEDDIDLELLLARFEHLIERRPLLLNSVLLRQNPHNVQEWHNRVLLY
EGKPHEIISTYTEAVQTVDPKLAVGKLHTLWVAFAKFYEENRQIDDARVVFEKGTHVPYN
KVDDLASVWCEWAEMEIRHENYEAALKLMQKATVMPPHKVAYHDETETVQMRLYKSLKVW
SMYADLEESFGTFKSCKAVYDRIIDLKISTPQIIINYGLFLEEHKYFEEAFRAYEKGIAL
FKWPNVYDIWNTYLTKFLKRYGGSKLERARDLFEQCLENCPPKFSKGLYLLYAKLEEEHG
MARHAMAVYERATKAVLPEEMFELFNIYIKKAAEIYGVPKTRQIYEKAIEVLTEENSREM
CLRFAEMETKLGEIDRARAIYAHCSQMCDPRVTADFWQTWKEFEVRHGNEDTMREMLRIK
RSVQATYNTQVNMMSAQMLSAASNVSGTVADLAPGAKDGMRMLEAKAAQMAHLERPAQQQ
AKSSNILFVRGETQGQDRDGTETTRVVNPDEINIDCDDDDEAEEDTDDNLPVQKQPVPQE
VFGSLKKSHHDDDDDNDDDDS
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtacggagaagtagttgatattgagcttgtttttaatgaagatgatctgcca
tatgaagaagaaatacttcggaatcccttttctgttaaacattggcagcggtacattgag
cacaagaaggggagtcctaaacatacagttaatgttatctttgaaagagccctaaaagaa
ttgccaggaagctacaaattgtggtacagttatctgaggcttcggaggagacaaaccaag
ggacgctgcattacggacccttcatatgaagacataaataatgcatttgagaggtcctta
gttttcatgcataagatgccacgaatttggcttgattactctcagttcttgatggatcag
tgtcgtataacaagaacacggcaggtgtttgaccgtgctcttcgcgctctnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnctgaaatttctgaaaatgtatgacattcctgaaacagct
gttagagtttttagaaggtacctcaaattatacccagaagatgcagaggattatattgaa
tatttgatatcaataggacgattggatgaagcagcagtgaagctagcctacatcgtcaac
aaggaggattttgtgtcaaagcatggcaagtcaaatcatcaactatggaatgaactttgt
gagctgatttcaaagaatcccgataaagtaaggtctctaaatgtcgatgctattattagg
ggcggacttagaagatacacagaccaactaggtcacctgtggaactcgctggcagattac
tatgtccgcagtggcctgttcgagagggcccgagacatatatgaagaagcggttnnnnnn
nnnnnnnnnnnnncgcaggtgtttgatgcttgtgcacagtttgaagaattaagtttgagt
aagagaatggaggaagcagcaggaaatctaaatccaacagaagaagatgacattgaccta
gagctgctgctggctcgatttgaacatctcatagaacgaaggccactgcttctcaattct
gtgctgttgcgacagaacccacataatgtacaagaatggcacaatagagtcttattatat
gaggggaagccacatgagatcatcagcacatacacagaagccgttcagactgtagaccca
aagcttgcagttggcaaactacatacactttgggttgcatttgccaaattttatgaagag
aacaggcaaattgatgatgctcgtgtggtttttgaaaaaggcactcatgtgccttacaac
aaagtagatgatttagcatctgtgtggtgtgagtgggcagagatggagattcggcatgag
aattatgaagctgcattgaagttaatgcagaaggcaactgtaatgcccccgcacaaggtg
gcatatcatgatgagactgaaacggtacagatgagattgtacaaatctctcaaggtgtgg
tcaatgtatgcagatttggaggagagttttggcacttttaagtcctgcaaagcagtctat
gaccgcatcatagacttaaaaatttctacgcctcagattattatcaactatggcctgttt
cttgaagaacataaatactttgaggaagctttcagggcatatgaaaaaggaattgcacta
tttaaatggccaaatgtatatgatatatggaacacctacttgaccaagttcctgaaacgt
tacggaggatcaaaactcgagagagcaagagatctgttcgagcagtgtctggagaattgt
ccaccaaaattttcaaagggtctttacttgctatatgcaaagctggaagaagaacatggg
atggcaagacatgctatggccgtctatgagcgagcgacaaaggcggtgttgccagaagag
atgtttgagctctttaatatttatattaagaaagctgcagaaatttatggagtccccaaa
acacggcagatatatgaaaaggcaattgaggtacttacagaggaaaattcacgagaaatg
tgcctgaggtttgctgagatggagacaaaacttggtgaaatcgacagagccagagcgatc
tacgcccattgcagccagatgtgtgatcccagggtgacagcagacttttggcagacctgg
aaagaatttgaagtacgacatgggaatgaggacacgatgagagagatgctgaggattaag
cgcagtgtgcaagctacatataacactcaggtgaacatgatgtctgcacaaatgctgtct
gcagccagcaatgtatcgggcactgtcgcagatctcgcaccaggagccaaagatggtatg
agaatgttagaagccaaagctgcgcagatggctcatctggagagacctgctcagcagcaa
gctaaaagtagcaatatattgtttgtgcgtggggagacacaaggtcaggacagagatgga
actgagacaactcgagttgtcaaccctgatgagatcaacatcgactgcgatgatgacgac
gaagctgaagaggacactgatgataatcttccagtacaaaaacagccagttccccaggaa
gtatttggaagtctgaagaaatcccatcatgatgatgacgacgacaacgatgatgatgat
tcatag
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