Zobellella sp. DQSA1: ACEVBK_00245
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Entry
ACEVBK_00245 CDS
T11130
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
zob Zobellella sp. DQSA1
Brite
KEGG Orthology (KO) [BR:
zob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zob03016
]
ACEVBK_00245
Enzymes [BR:
zob01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACEVBK_00245
Transfer RNA biogenesis [BR:
zob03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
ACEVBK_00245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1CSD-TOTE-2
S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
XGY38095
LinkDB
All DBs
Position
complement(60106..62073)
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AA seq
655 aa
AA seq
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MFQDNPLLAQLKQQLRESMPTKEGTVKATAKGFGFLEVSEKESIFIPPPYMKKVLHGDRI
TALVRTENEKEVAEPETLLEQGLTRFVARVKWFRDRLNIVPDHPLIKDAIKARAIKGLDE
KNLKDGDWVLGELKRHALNDNGFFAEVVELVAGVDDPIAPWWVVLARNKLANQAPRDQDE
WQTLEESLPRRDLTEVPFFTIDSESTQDMDDALSVKKLDSGWELTVAIADPTAYVPHDSD
LDKVAAERAFTVYLPGRNIPMLPRTLADELCSLKAGEERPALCARLLIDFDGKVTDQVEF
FAARIRSQAKLAYDKVSDWVEQTGDWQPESEAIAEQLRELTALTRARSAWRSEHAIVFKD
RPDYRFELDDASNVVAIHVDHRRIANQMVEEAMIAANLACGNWLTEHAGTGVFNVHAGFD
PEKLAQLAELLQHHEAPFEPESLASLEGFCALRRWLDARDTSYLDNRVRRYQSFAAMSVT
PAEHYGLGLAAYATWTSPIRKYGDIINHRLIKAILAEQEHEAHAPSAELAQHLSEQRRMH
RRAERDIADWLYVRYLQPAVAEGKVFDAEIIDIGRGGVKLRLQENGAVVFMPSSLILANR
DRLECSWDDGRVYLDKEAVYELGQYIQVILTEAVEDTRSLIAKPAVPLVPEKPAS
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagacaaccccctgctggcccagctcaagcaacagctgcgcgaatccatgccg
accaaggaaggtaccgtcaaggccaccgccaaaggtttcggcttcctcgaagtgagcgag
aaggaaagcattttcattccgccgccctacatgaagaaggtgctgcacggcgatcgcatc
accgccctggtgcgcaccgaaaacgagaaggaagtggccgaaccggaaaccctgctcgag
caggggctgacccgcttcgtggcccgggtgaagtggttccgtgaccggctcaacatcgtg
cccgatcacccgctgatcaaggacgccatcaaggcccgcgccatcaaggggttggatgaa
aagaacctgaaggacggcgactgggtgctgggcgagctcaagcgccacgccctgaacgac
aacggtttcttcgccgaggtggtggaactggtggccggggtggatgatcccatcgctccc
tggtgggtggtgctggcccgcaacaagctggccaaccaggcgccgcgggatcaggacgag
tggcagaccctggaagaatcgctgccgcgccgggatctcaccgaggtgcccttcttcacc
atcgacagcgaatccacccaggacatggacgacgccctcagcgtgaagaagctggacagc
ggctgggagctgaccgtggccatcgccgatcccaccgcctatgtgccccacgacagcgat
ctggacaaggttgccgccgaacgcgccttcaccgtctacctgcccggccgcaatattccc
atgctgccgcgcaccctggccgacgaactgtgctcgctcaaggccggcgaagagcgcccc
gccctgtgcgcccgcctgctgatcgactttgacggcaaggtcaccgaccaggtggagttc
ttcgccgcccgcatccgctcccaggccaagctggcctatgacaaggtgtccgactgggtc
gagcagaccggtgactggcagcccgagagtgaagccattgccgagcagctgcgcgaactg
accgccctcacccgcgcccgcagcgcctggcgcagcgagcacgccatcgtgttcaaggac
aggcccgactaccgcttcgagctggacgacgccagcaacgtggtggccattcacgtggac
catcgccgcatcgccaaccagatggtggaagaggcgatgatcgccgccaacctggcctgc
ggcaactggctgaccgaacacgccggcaccggggtgttcaacgtgcacgccggcttcgac
cccgagaagctggcccagttggccgagctgctgcaacaccacgaggcgccgttcgagccg
gaaagcctggccagcctggagggcttctgcgccctgcgccgctggctggacgcccgcgac
accagctacctggacaaccgggtgcgccgctaccagtccttcgccgccatgagcgtgacc
ccggccgagcactacggcctgggcctggccgcctacgccacctggacctcgcccatccgt
aaatacggcgacatcatcaaccaccggctgatcaaggcgatcctggccgagcaggagcat
gaggcccacgcccccagcgccgagctggcccagcacctgtccgagcagcgccgcatgcat
cgccgcgccgagcgcgacatcgccgactggctctatgtgcgctacctgcaaccggcggtg
gccgagggcaaggtattcgacgccgaaatcatcgacatcggccggggcggcgtcaagctg
cggctgcaggaaaacggcgccgtggtgttcatgccctcctccctgatcctggccaaccgg
gaccgactggagtgcagctgggacgacggccgcgtctacctggacaaggaagccgtctac
gagctgggccagtatatccaggtgatcctcaccgaagcggtggaagacacccgctccttg
atcgccaagccggcggtccccctggtgccggaaaaacccgcctcctga
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