Zobellella sp. DQSA1: ACEVBK_03275
Help
Entry
ACEVBK_03275 CDS
T11130
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
zob Zobellella sp. DQSA1
Brite
KEGG Orthology (KO) [BR:
zob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zob03009
]
ACEVBK_03275 (rlmD)
Enzymes [BR:
zob01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ACEVBK_03275 (rlmD)
Ribosome biogenesis [BR:
zob03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ACEVBK_03275 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Cons_hypoth95
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_15
MTS
Methyltransf_11
PrmA
N6_N4_Mtase
TPMT
RsmJ
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
XGY38668
LinkDB
All DBs
Position
676060..677409
Genome browser
AA seq
449 aa
AA seq
DB search
MLKPGQLVTVSVHSLTDKGDGIATLEGRPLYIEGILPGERAEVRLTLVKPNYCHGQAVQL
LQAVAGRCQDFCPYTACGGCQLRVMSNSAQLELKRQLLLEALQAQGLDCPVANTLGMSDP
FYYRNKAQYAVQPGPYIGFYAKHSHQLVEVDECRVQAPETTEVVRLIRSWMRQCAVPAYN
EAMHVGCVRHIMVRNGVNSGEVMVVLVVAEIPAETALEQLVAQLGAVSGLASLILNLNTA
TGNRVLGPDNRLLWGKDSIGDSLDGLAFSISPLSFYQVNPRQTEVLYREALRQASLQGHE
VVFDLYCGIGTIALFMSRKAHRVIGIELVPEAITDARANAALNAITNVEFHQGAAELLVP
ELYAEGVRADVVVVDPPRKGCDPALLETLARMRPERLVYVSCNPKTLARDLAWLTDHGFV
LEQATPVDMFPHTMHVETVALLTRRPGEK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgttaaagcccggccagctggttaccgtttctgttcacagccttaccgacaaaggggat
ggtatcgccaccctggagggacgcccgctctatatcgaaggtatcctgcccggtgagcgg
gccgaggttcgcctgaccctggtcaagcccaactattgccatggccaggcggtgcaactg
ctgcaggccgtcgccggccgttgccaggatttctgcccctacaccgcttgtggcggctgt
cagttgcgggtcatgagcaacagtgcccagctcgaactgaagcggcaattgctgctggag
gcgctgcaggcccaggggctggattgcccggtcgccaataccctgggcatgagcgaccct
ttttattatcgtaacaaggcccagtacgcggtacagcccggcccctatatcggtttttac
gccaagcacagccatcagttggtggaggtcgacgaatgccgggtgcaggcgccggagacc
accgaagtggtacgcctgatccggagctggatgcgccagtgtgccgtgcccgcctataac
gaagcgatgcacgtcggctgtgtgcgccatatcatggtgcgcaacggggtcaacagcggc
gaggtgatggtggtgctggtggtggccgagatacccgccgaaacggcgctggagcagttg
gtggcgcagctcggggcggtctccggcctggccagcctgatcctcaatctcaacacggca
accggcaaccgggtcctgggcccggacaatcgcctgctgtggggaaaagacagcatcggc
gacagcctggatggcctggccttttccatctcgcccctgtcgttttatcaggtcaatccg
cgccagaccgaggtgctgtatcgggaggcgctgcggcaggcgagcctgcaggggcatgag
gtggtgttcgatctctactgcggcatcggtaccatcgccttgtttatgtctcgtaaagcg
catcgggtgatcggcatcgagctggtacccgaggccattaccgatgctcgtgccaatgcg
gccttgaacgccatcaccaacgtcgagttccatcagggtgcggcggagctgctggtaccc
gagctttatgccgagggagtgcgtgccgacgtagtggtggtggatccgccacgcaaaggc
tgtgatccggccctgttggaaactctggcccgaatgcgcccggagcggttggtgtatgtc
tcctgcaatcccaagaccctggcccgggatctggcctggctgaccgaccatggctttgta
ctggagcaggcgacaccggtggatatgttcccccataccatgcatgtggaaaccgtggcc
ctgctgacccgccggcccggtgagaaataa
DBGET
integrated database retrieval system
