Zobellella sp. DQSA1: ACEVBK_05205
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Entry
ACEVBK_05205 CDS
T11130
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
zob Zobellella sp. DQSA1
Pathway
zob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACEVBK_05205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zob03019
]
ACEVBK_05205
Enzymes [BR:
zob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACEVBK_05205
Messenger RNA biogenesis [BR:
zob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACEVBK_05205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
XGY39030
LinkDB
All DBs
Position
complement(1074169..1075467)
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AA seq
432 aa
AA seq
DB search
MSFASLGLNAQLVQAINECGYTEPTPIQRQAIPLVLKGGDLLAGAQTGTGKTAGFGLPML
QRLSETKASALANGRAPVRALVLTPTRELAAQVEENLRAYAKHTDLRTLAMFGGVSINPQ
MKALGRKVDVVVATPGRLLDHVSQRSIDLSRVEMLVLDEADRMLDMGFIRDIRRILALLP
KKRQNLLFSATFSNEIKALAEDLLHQPEHIEVAVRNATAETISQRFYGVDKNRKRALLSY
LIGHHNWRQVLVFTRTKHGANRLAMQLDKDGLPAMAIHGDKSQGARTRALSQFKDGQLRV
LVATDIAARGIDISELPHVVNYELPHVAEDYVHRIGRTGRAGSTGEALSLICHEEKPLLK
AIEKLIKQSAELEILSGFEPGPEEVQPATKPPANNRGRGNGGGRGRAPTAANNKAPRSNK
PNRPQRHGRHDG
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgcttccctcggcctgaacgcacagctcgttcaagccatcaatgaatgtggt
tacacagagcccacccctatccagcgtcaggccattccgctggtgctgaaaggcggcgac
ctgctcgccggtgctcagaccggtaccggcaagaccgccggcttcggcctgcccatgctg
cagcggttgagtgaaaccaaggccagcgccctggccaacggccgggcgccggttcgtgcc
ctggtgctcacccccacccgcgagctggccgcccaggtggaggaaaacctgcgcgcctat
gccaagcataccgatctgcgcaccctggccatgttcggcggcgtcagcatcaacccgcag
atgaaggccctcggccgcaaggtggacgtggtagtggccaccccgggccggctgctggat
catgtgtcccagcgctccatcgatctttcccgggtcgaaatgctggtgctggatgaagcc
gaccgcatgctggacatgggctttatccgcgatatccgccgcattctggcactgttgccg
aaaaaacggcaaaacctgttgttttccgccaccttctccaatgaaatcaaggcgctggcc
gaagacctgctgcaccagcccgagcacatcgaagtggcggtacgcaacgccaccgccgag
accatctcccagcgtttttacggggtggacaagaaccgcaagcgcgccctgctcagctac
ctgatcggccaccacaactggcgccaggtgctggtatttacccgcaccaagcacggcgcc
aaccggttggcgatgcagctcgacaaggacggcctgccggccatggccatccacggcgac
aagagccagggtgcccgcacccgggccctgagccagttcaaggacggccagctgcgggtg
ctggtagccaccgatatcgccgcccgcggcatcgacatcagcgagttgccccacgtggtc
aactacgagctgccccatgtggcggaagactatgtgcaccgcatcggccgcaccggccgg
gccggaagcacaggtgaagccctgtcactgatctgccacgaagaaaaaccgctgctcaag
gccatcgaaaagctgatcaagcaaagcgccgaactggaaattctgtccggcttcgagccc
ggtccggaagaagtccaacccgccaccaaaccgccggccaacaaccgcggccggggcaat
ggcggtggccgcggtcgagcccccaccgcagccaacaacaaggcaccgcgcagcaacaaa
cccaaccggccccagcgccacggccgccacgacggctaa
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