Zobellella sp. DQSA1: ACEVBK_08220
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Entry
ACEVBK_08220 CDS
T11130
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
zob Zobellella sp. DQSA1
Pathway
zob03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACEVBK_08220 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zob03400
]
ACEVBK_08220 (uvrB)
DNA repair and recombination proteins [BR:
zob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACEVBK_08220 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACEVBK_08220 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
DEAD
UVR
AAA_30
UB2H
AAA_22
DUF87
Kinesin
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
XGY39598
LinkDB
All DBs
Position
1711204..1713198
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AA seq
664 aa
AA seq
DB search
MSKDFQLVSDYQPGGDQPNAIAQLLEGIDAGLAHQTLLGVTGSGKTFTMANVIARLNRPT
MILAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASINDHIE
QMRLSATKALMERRDVIIVASVSAIYGLGDPQSYLSMMLHLRTGDRLHQRDMLRRLAELQ
YSRNDAAFQRGTFRVRGEVIDIFPAESDSEAVRVELFDDEIERISLFDPLTGAVQQSLAR
FTIYPKTHYVTPRETLLDAIEQIKVELQARKAQLLAANKLLEEQRISQRTQFDIEMIQEL
GYCSGIENYSRYLSGRGEGEPPPTLFDYLPGDGLLIIDESHVTVPQIGGMYKGDRSRKET
LVEYGFRLPSALDNRPLRFEEFEALMPQTVFVSATPGPYELDKSGTDIAEQVVRPTGLLD
PELEVRSVATQVDDVLSEARARAERDERVLVTTLTKRMAEDLTEYLNDHGVRVRYLHSDI
DTVERMEIIRDLRLGQFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLRGKAILYADRITRSMAAAIGETERRRELQQRFNEEHGIVPKGLNKRITDVMDLD
GTKRIGSKRAKEKTPAHLPTAKELATQIAELEKSMLDHARNLEFEQAAAVRDRIHLLREQ
LIRS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagacttccaactggtcagcgactatcaacccggcggcgatcagcccaacgcg
atagcgcaactgctggagggcatcgatgccggcctggcacaccagaccctgctgggggtg
accggctccggcaagacctttaccatggccaacgtcatcgccaggctcaaccggcccacc
atgatactggctccaaacaagaccctggcggcccagctctacggcgagatgaaggaattc
ttcccccacaacgccgtggagtacttcgtctcctactacgactattaccagcccgaggcc
tatgtgccgaccaccgacaccttcatcgagaaggacgcctccatcaacgatcatatcgag
cagatgcggctgtcggccaccaaggcgctgatggaacggcgagacgtgatcatcgtcgcc
tcggtgtcggccatttacggcctgggcgacccccagtcctatctgagcatgatgctgcac
ctgcgtaccggcgaccggctccaccagcgcgacatgctgcgccggctggcggagctgcag
tacagccgcaacgacgccgcctttcagcgtggcaccttccgggtgcggggcgaagtgatc
gacatcttcccggcggagtccgacagcgaggcggtgcgggtagagctgttcgacgacgaa
atcgagcgcatcagcctgttcgacccgctcaccggcgccgtgcagcagagcctggcccgc
ttcaccatctaccccaagacccactatgtgaccccgcgcgagaccctgctggacgcgata
gagcagatcaaggtggagctgcaggcgcgcaaggcccagttgctggcggccaacaagctc
ttggaagagcagcgcatcagccagcgcacccagttcgacatcgagatgatccaggagctg
ggctactgctcgggcatagagaactactcccgttatctctcggggcggggggagggcgag
ccgccgcctaccctgttcgattacctgcccggcgacggcctgctgatcatcgacgagtcc
cacgtcacggtgccgcagatcggcggcatgtacaagggcgaccgttcgcgcaaggaaact
ctggtggagtacggtttccggctgccttcggcgctggacaaccggcccctgcgcttcgag
gagttcgaggccctgatgccgcaaacggtattcgtgtctgccacccctggcccctatgag
ctggacaagtcaggcactgacatcgccgagcaggtggtacgccccaccggtctgctcgat
cccgagctggaagtccggtcggtggctacccaggtagacgatgtgctgtcggaagcccgt
gcccgcgccgagcgggatgagcgggtgctggttactaccctcaccaaacgcatggcggag
gatttgaccgaatacctgaacgatcacggggtgcgggtgcgttacctgcactccgacatc
gataccgtggagcggatggagatcatccgcgacctgcgcctgggtcagttcgacgtgttg
gtgggcatcaacctgctgcgcgaagggctggacatgccggaggtctcgctggtggccatt
ctggacgcggacaaggaaggcttcctgcgctccgaacggtcgcttatccagaccataggg
cgcgcggcgcgcaacctgcgcggcaaggccatcctctatgcggaccgcatcacccgctcc
atggctgctgccatcggcgagaccgaacgccgccgtgaattgcagcagcgcttcaacgag
gagcacggcatcgtgcccaaggggcttaacaagcgtattaccgatgtgatggatctggac
ggtaccaagcggatcggctccaagcgcgccaaggagaagaccccggcgcatctgcccacc
gccaaggaactggcgacccagattgccgagctggaaaagagcatgttggatcacgccaga
aatctggagttcgagcaggcggccgcggtgcgtgatcgcatccacctgctgcgggagcag
ctgattcgcagctga
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