Zobellella sp. DQSA1: ACEVBK_08735
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Entry
ACEVBK_08735 CDS
T11130
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
zob Zobellella sp. DQSA1
Pathway
zob03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
ACEVBK_08735 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zob03400
]
ACEVBK_08735 (sbcB)
Enzymes [BR:
zob01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
ACEVBK_08735 (sbcB)
DNA repair and recombination proteins [BR:
zob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
ACEVBK_08735 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ACEVBK_08735 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACEVBK_08735 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
XGY39694
LinkDB
All DBs
Position
complement(1829096..1830514)
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AA seq
472 aa
AA seq
DB search
MNEQAQPTFFFHDYETAGISPALDRPVQFAGIRTDAELNEIGEPVMFYCRLPSDYLPSPE
ATLITGITPQKAQQEGLCEADFIARIHGEFSTPGTCILGYNNIRFDDEVTRHTLYRNFYD
PYAYSWQQGNSRWDLLDVVRAFYALRPDGIHWPEDEDGKPSFKLERLTATNGIEHGNAHD
ALADVRATIALARLLRKAQPKLFDYLFELRNKHKVKALIDVIGNTPLVHVSGMFSAWQGC
ASWIAPLAWHPDNANAVICVNLAMDLSPLLELDVEQLRERLYTRREALGELAPVPVKLVH
INKCPVLAKAAALTEQRADALGIDRARCRQSLDLLRHHPEIRAKVVELYQQEREFPPVTN
VDAALYQGGFFNDADKAAMAMVRSSSPEALATLPLQFNDARLPELLFRYRARNYPHTLDE
QEWQRWRLHCQELLAGQAEPYMHRLEQLVIEHQDDERKLALLQAVARYVQSL
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaacaggcacagcccacatttttctttcatgactacgaaacagccgggatcagc
ccggccctggacaggccggtgcagtttgccggcattcgtaccgatgccgagctgaacgaa
attggtgagccggtgatgttctactgccggttgccaagtgactacctgccttcgcccgaa
gcgacgctgatcaccggcatcaccccgcagaaggcccagcaggaagggctgtgcgaggcc
gactttatcgcccgcatccacggcgagttcagcacgcccggcacctgtatcctcggctac
aacaatatccgtttcgacgatgaagtcacccgccataccctgtatcgcaatttctacgac
ccttacgcctacagctggcagcagggcaattcccgctgggatctgctggacgtggtgcgc
gccttctacgccctgcgtccggacggtatccactggccggaagacgaagacggcaagccg
agcttcaagctggagcgcctgaccgcgaccaacggcatcgagcacggcaacgcccacgac
gccctggccgacgtgcgtgccaccattgccctggcccggctcttgcgcaaggcgcaaccc
aagctgttcgactacctgttcgagctgcgcaacaagcacaaggtgaaggcgctgatcgat
gtgatcggcaacacgcccctggtgcatgtgtccggcatgttctcggcctggcagggctgt
gccagctggattgcgcccctggcctggcacccggacaacgccaacgcggtgatttgcgtc
aacctggcgatggacctgagccccctgctggagctggatgtggaacagctgcgcgagcgg
ctctatacccgacgggaagcgctgggggaactggcgccggtgccggtgaagctggtgcac
atcaacaagtgcccggtactggccaaggcggcggccctgaccgagcagcgggccgacgcg
ctcggtatcgatcgcgcccgctgccgccagagcctggatctgctgcgccaccacccggaa
atccgcgccaaggtggtggagctgtaccagcaggagcgggagtttcccccggtgaccaat
gtggatgcggccctgtaccagggcggcttcttcaatgacgccgacaaggccgccatggcc
atggtgcgcagcagcagccccgaggcgctggccaccctgccgctgcagttcaacgatgcc
cgcctgcccgagttgctgttccgttaccgggcccgcaactatccccataccctggatgaa
caggaatggcagcgctggcggctgcactgccaggagctgctggccggccaggccgaaccc
tatatgcaccgactggaacaattggtgatcgaacatcaggatgatgaacgcaagctggcc
ctgctgcaggcggtggcccgttacgtgcaatccctgtaa
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