Zobellella sp. DQSA1: ACEVBK_09865
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Entry
ACEVBK_09865 CDS
T11130
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
zob Zobellella sp. DQSA1
Pathway
zob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACEVBK_09865 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zob03019
]
ACEVBK_09865 (rne)
03009 Ribosome biogenesis [BR:
zob03009
]
ACEVBK_09865 (rne)
Enzymes [BR:
zob01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACEVBK_09865 (rne)
Messenger RNA biogenesis [BR:
zob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACEVBK_09865 (rne)
Ribosome biogenesis [BR:
zob03009
]
Prokaryotic type
rRNA processing factors
ACEVBK_09865 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
XGY39912
LinkDB
All DBs
Position
complement(2032976..2036071)
Genome browser
AA seq
1031 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQKLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARNYFPAGYSYQGRPNIKEVVKEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALAHLKLPDGMGLIVRTAGVGKSGEEL
EWDLHVLQTHWSAIQEAAESRSAPFLIHQESNVIVRAIRDYLRRDIGEILIDNPVVFERA
KQHIQLVRPDFINRVKLYEGEVPMFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALQTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVRQDRARIQLGRISRFGLLEMSRQRLRPSLGESSTHVCPRCLGQGTIRDNESLAL
AILRLIEEEALKDNTGQIHAQVPVDVAAYLLNEKRKSIAGLENRYKVTIYIIPNEQLETP
HFEVARVRTNDVEDVTSFDLKTTIEKPAYIPRQSQAAPKSEQPALQGFTAPAPAPVPVAA
KVESAPAAQPGLLSRLFSALSSWFKGSAEPTQATPEPGEKPARPSARNNERRERGDRRNN
RNRRPRDEERAPRPAPAAQAEPSAEVKTDKPRRERRKPRREQPQQERQKPQQKETAAVEL
PLVQAPVPVQETELVEHEQKELVVAERRQRRQMRKKVRMDAEGRQGDTSPADAAVPTDDA
QAPEKAERRSRRQPKPQLEEEAVATEQPSHHQRGNNMPKRKRINEDSRRQRRQDSVAALI
AAHGEDKWVAQEETAATPVADIEPSPSTVEKTQSMPPVAAEQEVQPIPVTEEEAVHAEPE
AVLEPKAEPVQPAAVTEPKAEPVQPAVVTEPKAEPVQPAAVTEPKAEPVQPAAVTEPKAE
PVQPAVVTEPKAEPVQPAVVTEPKAEPVRPETAPVAEAPVQRQAEPETAVPEPVAAPEAA
PLNGKPRQVSGLYQAARQASAPMAKPPAVPVVPYVKPDYPPLERKAVVTSGRRAGTDAAR
STASAPTSKPE
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaacccaagaagaggagttgcgtgtagccctggtagac
gggcagaaactctatgatctggatatcgaaagccccggtcacgaacagaaaaaagccaac
atctataaaggcaagattacccgggtagaacccagcctggaagccgcctttgtcgactac
ggcgccgaacgccacggctttttgccgctcaaggaaatcgcccgtaactacttccccgcc
gggtacagctaccaaggccgccccaatatcaaggaagtggtcaaggaaggtcaggaagtc
atcgttcagatcgacaaggaagagcgcggcaacaaaggggctgccctcactacctttatc
agcctggccggttcctacctggtgctgatgcccaacaacccccgcgccggtggtatctcc
cgccgaatcgaaggtgacgagcgtaccgaactgaaggaagccctggctcacctcaagctg
cccgacggtatgggccttatcgtccgtaccgccggggtcggcaagtccggcgaagaactg
gagtgggacctgcacgtgctgcaaacccactggtccgccatccaggaagccgccgaaagc
cgctccgccccttttctgatccatcaggaaagcaatgtcatcgtccgtgccatacgtgac
tacctgcgccgtgacatcggcgagatcctgatcgacaacccggtggtgttcgaacgcgcc
aagcagcatatccaactggtgcgtcccgacttcatcaaccgggtcaagctgtacgaaggc
gaagtgcccatgttcagccactaccagatcgagagccagattgagtccgccttccagcgg
gaggtgcgcctgccctccggcggcagcatcgtcatcgaccccaccgaagcgctgaccagc
atcgacatcaactcttcccgcgccaccaagggcggtgatattgaggaaaccgcgctgcag
accaacctggaagcggcggaagagatcgcccgtcagctgcgcctgcgcgacctgggcggc
ctggtggtgatcgactttatcgacatgaccccggtgcgccaccagcgcgaggtggaaaac
cgcctgcgcgatgccgtacgccaggatcgggcccgcatccagctgggccgtatctcccgt
ttcggcttgctggaaatgtcccgccagcggctgcgtccgtcgctgggcgagtccagcacc
cacgtctgcccccgctgcctgggccagggcaccattcgtgacaacgaatccctggcgctg
gccatactgcgcctgatagaagaggaagcgctgaaggacaacaccgggcaaattcacgcc
caggtgccggtcgacgtggccgcctacctgctcaacgaaaagcgcaagtccatcgccggg
ctggaaaaccgctacaaggtcaccatttatattatccccaacgagcagctcgagactcct
cacttcgaggttgcacgggtacgcaccaacgatgtggaagacgtcaccagcttcgatctg
aaaaccacgatcgaaaaaccggcttacatccctcggcaaagccaggccgctcccaagagc
gaacaaccggccctgcaaggctttaccgctccggcaccggcccccgtgcccgtggcagcc
aaggttgaatccgcaccggcagcccaacccggtctgctgagccgcctgttctccgccctg
tccagctggttcaagggttcggcagagccgacgcaagccactccggagcccggcgagaag
cctgctcgtccgtccgcccgcaataacgagcgtcgggagcgcggtgatcgccgcaacaac
cgcaaccgcagaccgcgggacgaagagcgtgcccccaggccggcccctgcggcccaggcc
gagccatccgccgaggtgaaaaccgacaaaccccgccgcgagcgccgtaagccgcgtcgt
gagcaacctcagcaggagcgacagaaaccgcaacagaaagaaaccgctgcggtcgaactg
ccgctggtgcaggctcccgtccccgttcaggaaacagagctggtagagcacgagcagaag
gaactggtggtggcggagcgtcgccagcgtcgccagatgcgtaaaaaagtacgcatggat
gcggaaggccgccagggtgacacctcccccgccgatgcagcagtgccgaccgacgatgcc
caggctccggaaaaggcagagcgccgttcacgtcgccaacccaagccccagttggaagag
gaagcggtagccaccgagcagccgtctcaccaccagcgcggcaacaacatgcccaagcgc
aagcgcatcaatgaagacagccgccgccagcgccgccaggacagcgttgccgccctgatc
gccgcccacggtgaagataaatgggtcgcccaggaagaaactgcggctaccccggtggcg
gatatcgagccatccccttctacggttgagaagacccagagcatgccgccggtagccgcc
gagcaggaagttcaacccataccggttaccgaggaagaagctgtccatgccgagcccgag
gccgtactcgaaccgaaggccgaacccgtacagcccgcagccgtgaccgaaccgaaggcc
gaacccgtacagcccgcagtcgtgaccgaaccgaaggccgaacccgtacagcccgcagcc
gtgaccgaaccgaaggccgaacccgtacagcccgcagccgtgaccgaaccgaaggccgaa
cccgtacagcccgcagtcgtgaccgaaccgaaggccgagcccgtacagcccgcagtcgtg
accgaaccgaaggccgagcccgtacgccccgagactgcgcccgtggcggaagcccccgtt
cagcgccaggccgagccggaaacggcggtgcccgagccggtcgccgcacctgaagcagct
ccgctgaatggcaagccccggcaggtatccggcctctaccaggccgcccgccaggcctct
gcccccatggccaagccaccggcagtacctgttgtaccttacgtcaaaccggactatccg
ccattggagcgcaaggccgttgtgaccagcggccggcgtgccggcacagatgcggcccgt
agtaccgcttcggctcctacaagcaagcccgagtaa
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